PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62014981-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 224aa MW: 25764.6 Da PI: 9.3848

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62014981-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	23.3	1.6e-07	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg+ F+r nL+ H+r H AUR62014981-RA 66 HYCQVCGRGFKREANLRMHMRAH 88 68*******************99 PP
2	zf-C2H2	12.8	0.00037	157	180	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 ++C+ C+ k Fs s+Lk+H + + AUR62014981-RA 157 FVCNRCNtKEFSVLSDLKTHEKHC 180 89******************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MQKANNGQFS VDEVIVDSNS QGFLDGIKFN NHQAINKKTY QELEVSMEAY DLVEVDAADL 60 LAKYTHYCQV CGRGFKREAN LRMHMRAHGD KYKSSLMSDP LKKKNSEENN TTTKPPRKYS 120 CPQKGCRWNK NHVKFQPLKS MVCVRNHYKR SHCPKMFVCN RCNTKEFSVL SDLKTHEKHC 180 GDVKWYCSCG TTFSKKDKLM DHVALFVGHT PLIYPLITLS DNR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	1e-83	C2H2 family protein