PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62015379-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 238aa    MW: 25469.8 Da    PI: 9.5984
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62015379-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-0752651427
                    --TTTTT-SS-SSS CS
         zf-CCCH 14 tCkyGdrCkFaHgp 27
                     CkyGd+C+FaHg+
  AUR62015379-RA 52 RCKYGDKCHFAHGE 65
                    5***********96 PP
2zf-CCCH32.61.4e-10204228126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y+t+lC +f + G C +Gd+C+FaHg
  AUR62015379-RA 204 YRTKLCENFTK-GSCTFGDKCHFAHG 228
                     89*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MDGRKRGRNN DAGAVHSNGG FKKHKQVHLD AHLEKIATFC TMSLVATMLL LRCKYGDKCH  60
FAHGEWELNK PVGLPSFDDP RARGGHPMHG RFSGRHEPPV PAGLGAFGES ATAKISVDAS  120
LAGAIIGKSG VNSKQICRQT GVKLSIRDHD SDSNKRNIEL EGTFDQIKLA SEMVHDLVAS  180
VSANTPFNKA PGGPAPHGPF STNYRTKLCE NFTKGSCTFG DKCHFAHGAA ELRKSGV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-61C3H family protein