PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62015689-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Protein Properties

Length: 363aa MW: 39937.4 Da PI: 8.233

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62015689-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.1	5.5e-12	162	240	6	88
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 +p+++ ++g+ ++p + a++ +++ ++ ++ +sW++++ k+ + l k Wk+F+ +n+Lk+gD+++F+l+++ AUR62015689-RA 162 SPASAVQHGQQTIPAEGARSLPNIE-A---PVILTRGTKSWTMNY-LGKNVVHKRLDKRWKQFAVDNKLKVGDVCTFELISKdP 240 577888899999****9997664.3...35567799***.455555678*********************995423 PP
2	B3	40.8	4e-13	265	357	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f +lt+ +v+ + +l++p + a+ ++ ++ ++ ++ +sWe+++i ++ + l + Wk+F+ +n+Lk+gD+++F+l++++ +l+v+ AUR62015689-RA 265 FHIKLTKTHVSPQYQLTIPAEGARILPNI---EVP-VILTRGTESWEMNYIGNNIV-HKKLDGRWKQFAVDNKLKVGDVCTFELMSKDPMRLKVQ 354 66789999999*********9544433...222.3345677***654444.4579**********************9899999999 PP EE- CS B3 96 vfr 98 v+r AUR62015689-RA 355 VLR 357 987 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MRSCVMARDL FCTHCHRQGH DMATCFQRPG YPEWGGREKG RGMGKVGVAS PARANNTGGQ 60 PASRPLQGAA VTTADGAALV GVTSAQIKQL LDYLNSIRQS KLPMSDDECS LENDESDVRG 120 VGFDDMGEGA AGHNAASLWH EDTPHNQVAG ESARHADQPT DSPASAVQHG QQTIPAEGAR 180 SLPNIEAPVI LTRGTKSWTM NYLGKNVVHK RLDKRWKQFA VDNKLKVGDV CTFELISKDP 240 MREMKPRVNT CEDIEIEPKT GAPFFHIKLT KTHVSPQYQL TIPAEGARIL PNIEVPVILT 300 RGTESWEMNY IGNNIVHKKL DGRWKQFAVD NKLKVGDVCT FELMSKDPMR LKVQVLRVLS 360 PH*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MRSCVMARDL FCTHCHRQGH DMATCFQRPG YPEWGGREKG RGMGKVGVAS PARANNTGGQ  60
PASRPLQGAA VTTADGAALV GVTSAQIKQL LDYLNSIRQS KLPMSDDECS LENDESDVRG  120
VGFDDMGEGA AGHNAASLWH EDTPHNQVAG ESARHADQPT DSPASAVQHG QQTIPAEGAR  180
SLPNIEAPVI LTRGTKSWTM NYLGKNVVHK RLDKRWKQFA VDNKLKVGDV CTFELISKDP  240
MREMKPRVNT CEDIEIEPKT GAPFFHIKLT KTHVSPQYQL TIPAEGARIL PNIEVPVILT  300
RGTESWEMNY IGNNIVHKKL DGRWKQFAVD NKLKVGDVCT FELMSKDPMR LKVQVLRVLS  360
PH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	210	217	KRLDKRWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18000.1	5e-07	B3 family protein