PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62015989-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 230aa MW: 26572.2 Da PI: 8.9929

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62015989-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.2	1.9e-13	5	54	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 +g W++eEd++l+d + g+ +Wk+ ++ g + R++k+c++rw +yl AUR62015989-RA 5 KGCWSPEEDQKLIDFMRNNNGRpcNWKSLPKLAGiL-RCGKSCRLRWANYL 54 799*****************************55.**********97 PP
2	Myb_DNA-binding	49.2	1.2e-15	60	102	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++++ E ++l++++ +lG++ W++Ia++++ gRt++++k++w AUR62015989-RA 60 REPFSEHENKILIQLHGLLGNR-WAAIAAKLP-GRTDNDVKNHWK 102 789*****************.*****.*********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MFNNKGCWSP EEDQKLIDFM RNNNGRPCNW KSLPKLAGIL RCGKSCRLRW ANYLRPDIKR 60 EPFSEHENKI LIQLHGLLGN RWAAIAAKLP GRTDNDVKNH WKAHIKKYTT INLYSRTTPS 120 EKSHITRHMA QWESIRVETE ARLTYESLCF PLGYPRYNSD HFLCLWNSEV GESFRKMITR 180 KEHSGMTGQV WQPVSVKKEQ QESTYSGSDD LGDPSDIAMN MLLDSPVSE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	2e-69	MYB family protein