PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62016071-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 869aa MW: 98668.1 Da PI: 6.7648

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62016071-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.2	4.4e-08	121	185	16	81
trihelix 16 emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +++ + +rgk ++ + +ev++++ + g++r +k+ kw+n+ ++++k+ e+e++ + e++ +y AUR62016071-RA 121 NVGGSGGRGKTRAEKDREVAEFLNKYGVNRDAKTAGTKWDNMLGEFRKVYEWERGSEREQV-GKSY 185 55667889999*******************************************9744443.4445 PP

Sequence ? help Back to Top
Protein Sequence Length: 869 aa Download sequence
MSENKEEREN SPHHQKEERD SATTQKIRGP PPPPLFLPSS FDFEQSKRPR YVHHHQWKQQ 60 SPLGLQNPES SPSPSNPQAQ LTSPDSSSSP SLSPIPSSTG QELTNKQENQ QQQQQQFRKG 120 NVGGSGGRGK TRAEKDREVA EFLNKYGVNR DAKTAGTKWD NMLGEFRKVY EWERGSEREQ 180 VGKSYFRLSP YERKIHRLPA SFDEEVFEEF LKALTLPHPF RDDSFPLSSM FSERARQMQS 240 YLMHNPRNPF LGFEPHSSSN VGMSPLSTTS GSPRVELRRI GRMRMIWEEW VSLWAEEGEY 300 HRGRVKVQGS NNLLNADELI YFDDSMVASS LEAFEDGPLK GFSVDRFAPG QQLKVLGRRK 360 HSSSPLPSMS SADFNERLPF AIAAEPSIRW EFQDPTEYYL GCLRSPPTTL PTLLELSWYI 420 QEPPPEEFRL PIRKDIYRDL PQGRELFFTT SSNEPLDCKS FTIDILSSLI RSIPSITAST 480 SSSRDSYISL WDDCINRVVS KFCPSEMVFT RKQLTKATSS ESFRDQWPNL TGMVKNLCLW 540 RGEEIDQIRE SQPFIDPSST ITQKISWTYN DLPYVLGYYA LGHNVTFCAL SPPSPSPSSS 600 QDSQITRTDL YSLDLTNPSE RVKLLVPCWR IGILLASLAE RCTKNGCQSD YERHDQGDGN 660 IIEMTTTTTT RFYPSKRRWQ TTKEIYSVLD QRVVPHAEHM ISYDEEELAL VFKPRGIKTK 720 PKNTQQLVLA LKQVAKALVA LHDLSFMHRD LSWEKVLMMS KAEEWFVAGF EEAVGAPQIN 780 PYNVITMTAV APEMGRGVHG VKVDVYGIGN LIKTSEVKSE GIVGKQLIEL EGKCMEQNPE 840 QRPTAADCYH HLLQIQSSLS SAASARCN*

Sequence ? help Back to Top

Protein Sequence Length: 869 aa Download sequence

MSENKEEREN SPHHQKEERD SATTQKIRGP PPPPLFLPSS FDFEQSKRPR YVHHHQWKQQ  60
SPLGLQNPES SPSPSNPQAQ LTSPDSSSSP SLSPIPSSTG QELTNKQENQ QQQQQQFRKG  120
NVGGSGGRGK TRAEKDREVA EFLNKYGVNR DAKTAGTKWD NMLGEFRKVY EWERGSEREQ  180
VGKSYFRLSP YERKIHRLPA SFDEEVFEEF LKALTLPHPF RDDSFPLSSM FSERARQMQS  240
YLMHNPRNPF LGFEPHSSSN VGMSPLSTTS GSPRVELRRI GRMRMIWEEW VSLWAEEGEY  300
HRGRVKVQGS NNLLNADELI YFDDSMVASS LEAFEDGPLK GFSVDRFAPG QQLKVLGRRK  360
HSSSPLPSMS SADFNERLPF AIAAEPSIRW EFQDPTEYYL GCLRSPPTTL PTLLELSWYI  420
QEPPPEEFRL PIRKDIYRDL PQGRELFFTT SSNEPLDCKS FTIDILSSLI RSIPSITAST  480
SSSRDSYISL WDDCINRVVS KFCPSEMVFT RKQLTKATSS ESFRDQWPNL TGMVKNLCLW  540
RGEEIDQIRE SQPFIDPSST ITQKISWTYN DLPYVLGYYA LGHNVTFCAL SPPSPSPSSS  600
QDSQITRTDL YSLDLTNPSE RVKLLVPCWR IGILLASLAE RCTKNGCQSD YERHDQGDGN  660
IIEMTTTTTT RFYPSKRRWQ TTKEIYSVLD QRVVPHAEHM ISYDEEELAL VFKPRGIKTK  720
PKNTQQLVLA LKQVAKALVA LHDLSFMHRD LSWEKVLMMS KAEEWFVAGF EEAVGAPQIN  780
PYNVITMTAV APEMGRGVHG VKVDVYGIGN LIKTSEVKSE GIVGKQLIEL EGKCMEQNPE  840
QRPTAADCYH HLLQIQSSLS SAASARCN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	5e-07	Trihelix family protein