PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62016149-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 753aa MW: 85441.4 Da PI: 6.6184

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62016149-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.9	2.5e-21	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k++ +w+vt ++++HnHel AUR62016149-RA 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGHPQAKPSEEGKLQRNRKSSRCGCQAYMRIVKRSdldVPEWRVTGFSNNHNHELL 152 6*************9998874556679***************99**************99998676789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence
MTVNGSQNME SSENETDLSQ DNIESVEEIP EDAILSRQTS VNLVPFIGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGHP QAKPSEEGKL QRNRKSSRCG 120 CQAYMRIVKR SDLDVPEWRV TGFSNNHNHE LLKSVEVQIP PSHCTISADD KSRICLFAKA 180 GMSARQMLRL MELEKGVKLG CLPFTELNIR DLLQSFRHVD KDNDAIDLIS MCKRLKDENS 240 YFKYDFKLDG HNRLEHIAWS YPSSIQKYEA FGDAILLDTN HRLDAYDMLL GLLMGVDNHG 300 KACLYSCVLL RNENLESFTW ALKTFLCFMK GKAPQTILTD QNIWLKEAIA CEMPETKHAF 360 SIWHIIANLS DWFSLPLGSH YDGWKTEFYR LYSLEMVDEF EAGWKEMVDR YGLQSNKYII 420 CLYALRDFWA LSFLRRYFFA GLMSRSVTDS INALIQRILS AQSTLDCFID EVANIAEYDD 480 HGGSKLKMQQ NQKVSLKTGS PMESHAATVF TPFAFSLLQE ELVSAPQYAS IMVGEGCFQI 540 RHHTEMDGGC KVMWNPSQEL IHCSCHQFEF LGILCRHILR VLSTNNCFRI PDPYLPLRWR 600 LVSNEHIEKE QTDKAKILEA IASTIVSESV ITEERLTFAC EHMSMVLAHI KQLPKLSNHH 660 ETNEMGINSS AGLLIIPGVE GSAGISQCFS LGNPHESFLV KLKEQNPNPG LENNMSRKRR 720 RAIPPCEQYA HDACDSAIIE GNTGGDAFGG FL*

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence

MTVNGSQNME SSENETDLSQ DNIESVEEIP EDAILSRQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGHP QAKPSEEGKL QRNRKSSRCG  120
CQAYMRIVKR SDLDVPEWRV TGFSNNHNHE LLKSVEVQIP PSHCTISADD KSRICLFAKA  180
GMSARQMLRL MELEKGVKLG CLPFTELNIR DLLQSFRHVD KDNDAIDLIS MCKRLKDENS  240
YFKYDFKLDG HNRLEHIAWS YPSSIQKYEA FGDAILLDTN HRLDAYDMLL GLLMGVDNHG  300
KACLYSCVLL RNENLESFTW ALKTFLCFMK GKAPQTILTD QNIWLKEAIA CEMPETKHAF  360
SIWHIIANLS DWFSLPLGSH YDGWKTEFYR LYSLEMVDEF EAGWKEMVDR YGLQSNKYII  420
CLYALRDFWA LSFLRRYFFA GLMSRSVTDS INALIQRILS AQSTLDCFID EVANIAEYDD  480
HGGSKLKMQQ NQKVSLKTGS PMESHAATVF TPFAFSLLQE ELVSAPQYAS IMVGEGCFQI  540
RHHTEMDGGC KVMWNPSQEL IHCSCHQFEF LGILCRHILR VLSTNNCFRI PDPYLPLRWR  600
LVSNEHIEKE QTDKAKILEA IASTIVSESV ITEERLTFAC EHMSMVLAHI KQLPKLSNHH  660
ETNEMGINSS AGLLIIPGVE GSAGISQCFS LGNPHESFLV KLKEQNPNPG LENNMSRKRR  720
RAIPPCEQYA HDACDSAIIE GNTGGDAFGG FL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	717	721	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein