PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62016375-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 211aa    MW: 24301.3 Da    PI: 8.9168
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62016375-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.5e-062853126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ykt +Cr+f  t  C++GdrCkF H 
  AUR62016375-RA 28 YKTLPCRNFWFTRRCHFGDRCKFFHL 53
                    9**********************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MTNYSIVERP SEAPFSANRG SFTVNYKYKT LPCRNFWFTR RCHFGDRCKF FHLPEESQRS  60
CRYNSRSTCP YGERCMYPHR ESDYYAGRRE DLYTENSANN TQPVDVDSWC NTRECTKLMI  120
VDNDINTNGS VCNYALGQEG SRRFAPVLAS ESENAHAAPK TLVKNAFPSE VQKPLKPTAS  180
KHRLPPPRVS SFKWTRPKKI VGIYADWIDE *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-08C3H family protein