PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62016454-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 199aa    MW: 22953.5 Da    PI: 10.2469
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62016454-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.99.8e-27958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien +nrqvt+skRr+g++KK +EL +LCda++ +iifs tgkl++++
  AUR62016454-RA  9 KRIENRTNRQVTYSKRRQGLMKKTKELAILCDAQIGLIIFSGTGKLHTFP 58
                    79***********************************************8 PP
2K-box60.18.8e-21841571285
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                      + ++l  el+ L++ i+n ++++R++lGedL++L l++L++ eq+Le+sl+ +R +Kn+l+ +q+e+l++k +
  AUR62016454-RA  84 DNRAELFSELQALREAIHNAEQSIRNYLGEDLGPLPLEDLHKHEQKLESSLNVVRVRKNQLMQQQMENLRRKSE 157
                     45667889***************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MGRGKIEMKR IENRTNRQVT YSKRRQGLMK KTKELAILCD AQIGLIIFSG TGKLHTFPES  60
SNSSLEQTIQ RYLNVQGIQL PVQDNRAELF SELQALREAI HNAEQSIRNY LGEDLGPLPL  120
EDLHKHEQKL ESSLNVVRVR KNQLMQQQME NLRRKSELCP KQGYARGCIS SDRMKMDMLQ  180
VWLNSFRVKY GLQMFATT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.25e-48MIKC_MADS family protein