PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62017271-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 545aa MW: 60302.8 Da PI: 8.3076

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62017271-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.5	1.9e-10	28	59	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g WT+eEd ll avk++ g++Wk+I ++ + AUR62017271-RA 28 KGGWTEEEDNLLTAAVKKHNGKNWKKIGEYKP 59 688************************98765 PP
2	Myb_DNA-binding	58.4	1.6e-18	107	153	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ + + v+++G ++W+ Ia++++ gR +kqc++rw+++l AUR62017271-RA 107 KGPWTKEEDDCIMEMVQMHGCKSWSVIAKRLP-GRIGKQCRERWHNHL 153 79****************************.***********97 PP
3	Myb_DNA-binding	55	1.9e-17	159	202	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT+eE+ ll +++++G++ W+ Iar ++ gRt++ +k++w++ AUR62017271-RA 159 KDAWTEEEESLLTYYHQRYGNK-WAEIARFLP-GRTDNAIKNHWNS 202 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MSCSSCENAT PRSTPLHGTS GPTRRSSKGG WTEEEDNLLT AAVKKHNGKN WKKIGEYKPL 60 YIVVSFVFIV LRTIEGFSVN CSEHFSGRTD VQCLHRWQKV LNPELVKGPW TKEEDDCIME 120 MVQMHGCKSW SVIAKRLPGR IGKQCRERWH NHLDPAIKKD AWTEEEESLL TYYHQRYGNK 180 WAEIARFLPG RTDNAIKNHW NSSLKKKLDA RSPHGFTQSI NTTTFEANCY EGKLDLCRVK 240 AAANVYEDSC TATIYGTETC STELALGNTP GNSYRSEIRL NRPSRMLFDE QDAPLGADLQ 300 LSSTATAGSR LNFPSTNYKA TPLTMLALES PKRPRSGSKT VDQVFRSLDK PFLSLGMSDF 360 SGDDAQGKKK NRINGISTDS EGTSYGNLCY EPPGLRISET GQLYGVNYVE NNDAQTNSPL 420 YLSTPPSHVY TPTSTGSPES ILRNSAMSFS MPSIIRKKSS SKLRNSAEKG MGMQDFRKAE 480 TSAAHKPVER CLELSFDLEA DVGAVKRGAS VATPDSEAVL CVAVGQSSNL DEKGGSEIRL 540 DLNR*

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MSCSSCENAT PRSTPLHGTS GPTRRSSKGG WTEEEDNLLT AAVKKHNGKN WKKIGEYKPL  60
YIVVSFVFIV LRTIEGFSVN CSEHFSGRTD VQCLHRWQKV LNPELVKGPW TKEEDDCIME  120
MVQMHGCKSW SVIAKRLPGR IGKQCRERWH NHLDPAIKKD AWTEEEESLL TYYHQRYGNK  180
WAEIARFLPG RTDNAIKNHW NSSLKKKLDA RSPHGFTQSI NTTTFEANCY EGKLDLCRVK  240
AAANVYEDSC TATIYGTETC STELALGNTP GNSYRSEIRL NRPSRMLFDE QDAPLGADLQ  300
LSSTATAGSR LNFPSTNYKA TPLTMLALES PKRPRSGSKT VDQVFRSLDK PFLSLGMSDF  360
SGDDAQGKKK NRINGISTDS EGTSYGNLCY EPPGLRISET GQLYGVNYVE NNDAQTNSPL  420
YLSTPPSHVY TPTSTGSPES ILRNSAMSFS MPSIIRKKSS SKLRNSAEKG MGMQDFRKAE  480
TSAAHKPVER CLELSFDLEA DVGAVKRGAS VATPDSEAVL CVAVGQSSNL DEKGGSEIRL  540
DLNR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	5e-79	MYB family protein