PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62017395-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C2H2
Protein Properties Length: 293aa    MW: 33625.2 Da    PI: 7.0502
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62017395-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-054264123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C  Cg+ F+ ++ L  H ++H
  AUR62017395-RA 42 YVCRVCGRKFRVNEKLIEHFKVH 64
                    9******************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MVAYANHHAF SYVPPAVREL RNERKVLNRL ENKGVIRSVE PYVCRVCGRK FRVNEKLIEH  60
FKVHEREHQK RLKQIESAKG KKRVTLVGKY AMKMEKYKNA ARDILTPKVG YGLGDDLKRA  120
GFWVKMVSDE PQAADVALRS HIVDMMDHRR IQCLVIVSDD SDFLGVLKEA KERCLKTVVV  180
GDNHDGVLKR NADASFSWRD ILVGKAKTQA VSVVGQWKDR DVLKRLEWSY NPDLERDVCK  240
GSNACDFEDV QLEEEDTDDS IEEDHDRLLH NDDRPWWELD PVDDGASSNP LT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-116C2H2 family protein