PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62017651-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

FAR1

Protein Properties

Length: 446aa MW: 52414.8 Da PI: 5.2279

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62017651-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.8	1.5e-17	108	203	9	90
FAR1 9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 evGFs+rk++++++ +++ +t++ +vCs egkr+++ kk ++++ r+ + trt+Cka+l+ k+++dgk++v + +l+HnHel AUR62017651-RA 108 EVGFSIRKHTTRYRLHTRIVTEKYYVCSAEGKRHTTAKKtnmvlmvdednkdlKQRKPRQVSITRTNCKASLREKMNDDGKFKVVSHVLQHNHEL 202 79*******************************99999*******98888999999******************************9 PP FAR1 90 a 90 + AUR62017651-RA 203 T 203 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MPETSKASNY ENLMREFLQL QRENRPPLTQ HPEKTWSFDL NQTFREGEVE NFVDDFDEFN 60 DDNIQNSKVP EIQIQDIENQ GVSNTLEDED QVIPNTLDEE GQPVDEDEVG FSIRKHTTRY 120 RLHTRIVTEK YYVCSAEGKR HTTAKKTNMV LMVDEDNKDL KQRKPRQVSI TRTNCKASLR 180 EKMNDDGKFK VVSHVLQHNH ELTRKQWHYL HRSEREVTIE KAEAIKTMKS AGLSTMGTYN 240 YMCTEANGEE NLGHSVVDHL NFCSRLRMEQ IEAGDAQTLV NTLIEEQKED PNFYFRVKFD 300 KEGRISNIFW RDAMMLEDYK IYGDVLVFDT TLIQHTEQIG NEKTESFVWL LETFKKSMEN 360 RIPTSIFTDQ DQAMATAIEQ VLPDTRHRLC IWHLEQNAIT RFGALKRDNE FKKIFNKCLK 420 GCVTETEFEE RWKEMIQKFD LVNHA*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MPETSKASNY ENLMREFLQL QRENRPPLTQ HPEKTWSFDL NQTFREGEVE NFVDDFDEFN  60
DDNIQNSKVP EIQIQDIENQ GVSNTLEDED QVIPNTLDEE GQPVDEDEVG FSIRKHTTRY  120
RLHTRIVTEK YYVCSAEGKR HTTAKKTNMV LMVDEDNKDL KQRKPRQVSI TRTNCKASLR  180
EKMNDDGKFK VVSHVLQHNH ELTRKQWHYL HRSEREVTIE KAEAIKTMKS AGLSTMGTYN  240
YMCTEANGEE NLGHSVVDHL NFCSRLRMEQ IEAGDAQTLV NTLIEEQKED PNFYFRVKFD  300
KEGRISNIFW RDAMMLEDYK IYGDVLVFDT TLIQHTEQIG NEKTESFVWL LETFKKSMEN  360
RIPTSIFTDQ DQAMATAIEQ VLPDTRHRLC IWHLEQNAIT RFGALKRDNE FKKIFNKCLK  420
GCVTETEFEE RWKEMIQKFD LVNHA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-48	FAR1 family protein