PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62017737-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 410aa MW: 44824.8 Da PI: 8.2309

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62017737-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.3	1.3e-11	12	55	4	45
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ e d+ + +a++ + + +W++Ia+ ++ g+tl+++k+++ AUR62017737-RA 12 WSREQDKAFENAIATHSEDledNWEKIAADVP-GKTLEEVKNHYE 55 ******************************.********96 PP
2	Myb_DNA-binding	25.5	3.1e-08	245	280	12	47
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ + +++G+g+W++I+r + +Rt+ q+ s+ qky AUR62017737-RA 245 FLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 280 777899*****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MTVDEKGDSS FWSREQDKAF ENAIATHSED LEDNWEKIAA DVPGKTLEEV KNHYELLFED 60 VKEIEAGRVP LPSYSSSSEG SSGLAAEEGN GGKKGQFANA GSEPNQGSKA SKADQERRKG 120 IAWTEDEHRQ VCYLILVLYL GMACGVAWWP QAVLFVPSST KELRPRHDPE HKVSCWARPF 180 LSRGVFRLRQ PSENFNFVIA TNTLFLVFAV ISWKGWDIVE KETPCIWGVH CVSHTYRLAH 240 RIWLFLLGLE KYGKGDWRSI SRNFVVTRTP TQVASHAQKY FIRLNSMNKD RRRSSIHDIT 300 NVNSGDVSAS QGPITGQVNA PASGTAPGKT EKLVAQPPAA PSGVGMYGTP TIGQPISGPL 360 VSAVGTPVNL PPPHMAYGVR VPVPGSVVPG APMGMAPLTY PMPHTSAHR*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MTVDEKGDSS FWSREQDKAF ENAIATHSED LEDNWEKIAA DVPGKTLEEV KNHYELLFED  60
VKEIEAGRVP LPSYSSSSEG SSGLAAEEGN GGKKGQFANA GSEPNQGSKA SKADQERRKG  120
IAWTEDEHRQ VCYLILVLYL GMACGVAWWP QAVLFVPSST KELRPRHDPE HKVSCWARPF  180
LSRGVFRLRQ PSENFNFVIA TNTLFLVFAV ISWKGWDIVE KETPCIWGVH CVSHTYRLAH  240
RIWLFLLGLE KYGKGDWRSI SRNFVVTRTP TQVASHAQKY FIRLNSMNKD RRRSSIHDIT  300
NVNSGDVSAS QGPITGQVNA PASGTAPGKT EKLVAQPPAA PSGVGMYGTP TIGQPISGPL  360
VSAVGTPVNL PPPHMAYGVR VPVPGSVVPG APMGMAPLTY PMPHTSAHR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-53	MYB family protein