PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62017934-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family Trihelix
Protein Properties Length: 424aa    MW: 48675.9 Da    PI: 8.8369
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62017934-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.64e-2452159187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......................rergferspkqCkekwenlnkrykkikegekkrt 72 
                     rW++qe++aL+++r+em+ ++r++ +k plW+e+s+                         +e g++rs+k+Ckek+en+ k+++++k+ + +rt
  AUR62017934-RA  52 RWPQQETMALLRIRSEMDFAFRDSGSKSPLWDEISSTSvslfklgalaesgvlmlfvfrrmAELGYHRSAKKCKEKFENIYKYHRRLKNCSYDRT 146
                     8***********************************999******************************************************98 PP

        trihelix  73 sessstcpyfdqlea 87 
                     +++   +++fdqlea
  AUR62017934-RA 147 NRKA--YRFFDQLEA 159
                     7776..*******85 PP
2trihelix82.46.1e-26347421175
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                     rW+k+ev aLi+++++me +++r   k+p Wee+s +m+  g+ r++k+Ckekwen+nk+y+++k+g+k+r+++s
  AUR62017934-RA 347 RWPKEEVEALIKIKTNMELEYQRVGPKGPMWEEISTAMKNFGYDRNAKRCKEKWENINKYYRRVKDGNKQRHADS 421
                     8********************************************************************985443 PP
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    
MVEISGDRRE NELGKSEKVE ERENAKNKEE DDKNGAAELA VAVAERNSAA NRWPQQETMA  60
LLRIRSEMDF AFRDSGSKSP LWDEISSTSV SLFKLGALAE SGVLMLFVFR RMAELGYHRS  120
AKKCKEKFEN IYKYHRRLKN CSYDRTNRKA YRFFDQLEAL GHQQSSFQTS ASEPADTSMN  180
DTAYVVSPIS SHPQCVPQMI MPASVNLDSF TISTSTTSNS GSESEGARTK KRKWADFFDI  240
LMKSVLEKQE ALQNKFLEAL DKHEHERQAR EEAWKMQQMD RIKKEQELLM QERSISAAKD  300
AAIAFLQKVL EQGKISGTSE PVLEKPSQEL SIVCRKEKDN GENSSSRWPK EEVEALIKIK  360
TNMELEYQRV GPKGPMWEEI STAMKNFGYD RNAKRCKEKW ENINKYYRRV KDGNKQRHAD  420
SKT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-95Trihelix family protein