PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62017967-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 181aa MW: 20330.8 Da PI: 4.607

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62017967-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.6	3.3e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++ rqvtfskRr g++KKAeELS+LCda+va+i+fs tgkl+eyss AUR62017967-RA 9 KKIDNTTARQVTFSKRRRGLFKKAEELSILCDADVALILFSATGKLFEYSS 59 68***********************************************96 PP
2	K-box	55.2	3e-19	59	123	34	98
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + Rh+ Ge+L+ Ls++eLqqLe+ Le +l+++ +kK e ++++i+ l +k el een+ Lr+++ AUR62017967-RA 59 STRHMRGEELQGLSIEELQQLEKSLEFGLRHVMDKKGEKIMNEIDLLEQKGSELMEENEWLRQQV 123 67*************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence
MAREKIQIKK IDNTTARQVT FSKRRRGLFK KAEELSILCD ADVALILFSA TGKLFEYSST 60 RHMRGEELQG LSIEELQQLE KSLEFGLRHV MDKKGEKIMN EIDLLEQKGS ELMEENEWLR 120 QQVLEASKGI QQAADSENVI YEEGQSSESV TNGYSSSSGP SQDNDESSDL YLKLGLPYSG 180 *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	3e-69	MIKC_MADS family protein