PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62018023-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

HD-ZIP

Protein Properties

Length: 214aa MW: 24489.6 Da PI: 8.4516

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62018023-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.6	5.9e-20	48	102	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le F ++++ e++ +LA++l+L+ rqV vWFqNrRa++k+ AUR62018023-RA 48 KKRKLSEEQVNMLEMSFGCEHKLESERKDRLASELNLDPRQVAVWFQNRRARWKN 102 56699************************************************95 PP
2	HD-ZIP_I/II	119.7	1.6e-38	48	139	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqv++LE+sF e+kLe+erK +la+eL+l+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ e++rLe+ev +L+e+l++ AUR62018023-RA 48 KKRKLSEEQVNMLEMSFGCEHKLESERKDRLASELNLDPRQVAVWFQNRRARWKNKKLEHEYSKLKNEHEKTIVEKCRLETEVLSLKEQLSN 139 9***************************************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MQGEDNLVGL IPQLYSGVYN QMAPQQGDPP KRRRRRKNKG DGSSLAAKKR KLSEEQVNML 60 EMSFGCEHKL ESERKDRLAS ELNLDPRQVA VWFQNRRARW KNKKLEHEYS KLKNEHEKTI 120 VEKCRLETEV LSLKEQLSNA QKEMQKQVDR SSTSSSAISS NSPSSSLTMD QHPNVVDPQL 180 LEEQFGIGGC FDSMFYVPDT NYGASMDWAA GLYM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	36	KRRRRR
2	31	37	KRRRRRK
3	31	51	KRRRRRKNKGDGSSLAAKKRK
4	32	52	KRRRRRKNKGDGSSLAAKKRK
5	33	53	KRRRRRKNKGDGSSLAAKKRK
6	34	54	KRRRRRKNKGDGSSLAAKKRK
7	35	55	KRRRRRKNKGDGSSLAAKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-56	HD-ZIP family protein