PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62018248-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

ARF

Protein Properties

Length: 613aa MW: 67993.9 Da PI: 7.584

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62018248-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.7	1.1e-23	123	224	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD++vF + + AUR62018248-RA 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGVTWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLR--AD 213 89**************************986445444..8999*****************************************4..37 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r AUR62018248-RA 214 NGDLFVGIRRP 224 7888**985 PP
2	Auxin_resp	112.5	4e-37	276	359	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF vk+ v++a++v++++GmRfkmafetedss++++ +G +++v+ +dp++WpnS+Wr+L+ AUR62018248-RA 276 AANLAASGKAFEVVYYPRASTPEFFVKTGAVRAAMQVQWCAGMRFKMAFETEDSSRISWfMGNISSVQVVDPIHWPNSPWRLLQ 359 7899******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MINVMNPSKE SMNEVESCLD RQLWHSCAGG MVQMPEINSK VLYFPQGHIE HAQVNSIDLK 60 NYPKIPPLIP CRISGIKYLA NQENDEVYAK IRLVPLRGND FDDEDGFIGS NYEMEGSEKP 120 ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTILAKDVHG VTWKFRHIYR 180 GTPRRHLLTT GWSNFVNQKK LVAGDSIVFL RADNGDLFVG IRRPKREILH CGGSSYGGGF 240 GAFLRSDENR LARNFEGMGS NSGNNEKVRA ESVVEAANLA ASGKAFEVVY YPRASTPEFF 300 VKTGAVRAAM QVQWCAGMRF KMAFETEDSS RISWFMGNIS SVQVVDPIHW PNSPWRLLQV 360 AWDEPDLLQN VKRVNPWSVE SVTNMPQIHI SPFSPPRKKL RLHQVPEIPF ADQLPMPAFT 420 SRAYGPSGSL FGLAEVPAGV QGARHAHFRQ FLSDHINKVN YSSLLSNGPE LKYHHGGFSA 480 KKPIVRENLS SFLTMATLQE SPKENDMPTP KFMLFGKPIL TKQQISESSS SDSARTASDS 540 NADRMGNSSD DCNDTSLNKS SSEGFPCKVF MDSEDVGRTL SLSALGSCDG MYKKIAQHVW 600 QGKVLEAEQC AL*

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MINVMNPSKE SMNEVESCLD RQLWHSCAGG MVQMPEINSK VLYFPQGHIE HAQVNSIDLK  60
NYPKIPPLIP CRISGIKYLA NQENDEVYAK IRLVPLRGND FDDEDGFIGS NYEMEGSEKP  120
ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTILAKDVHG VTWKFRHIYR  180
GTPRRHLLTT GWSNFVNQKK LVAGDSIVFL RADNGDLFVG IRRPKREILH CGGSSYGGGF  240
GAFLRSDENR LARNFEGMGS NSGNNEKVRA ESVVEAANLA ASGKAFEVVY YPRASTPEFF  300
VKTGAVRAAM QVQWCAGMRF KMAFETEDSS RISWFMGNIS SVQVVDPIHW PNSPWRLLQV  360
AWDEPDLLQN VKRVNPWSVE SVTNMPQIHI SPFSPPRKKL RLHQVPEIPF ADQLPMPAFT  420
SRAYGPSGSL FGLAEVPAGV QGARHAHFRQ FLSDHINKVN YSSLLSNGPE LKYHHGGFSA  480
KKPIVRENLS SFLTMATLQE SPKENDMPTP KFMLFGKPIL TKQQISESSS SDSARTASDS  540
NADRMGNSSD DCNDTSLNKS SSEGFPCKVF MDSEDVGRTL SLSALGSCDG MYKKIAQHVW  600
QGKVLEAEQC AL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein