PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62018436-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 374aa MW: 43467.2 Da PI: 8.1543

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62018436-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00072	20	42	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ Cg + s ks+L++Hi +H AUR62018436-RA 20 YYCQFCGICRSKKSLLNSHILSH 42 89*******************96 PP
2	zf-C2H2	21.9	4.4e-07	67	88	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF+ + +Lk+H+ +H AUR62018436-RA 67 TCEECGASFKKPAHLKQHMLSH 88 6*******************99 PP
3	zf-C2H2	21.5	5.9e-07	94	118	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp dC+ s++rk++L+rHi H AUR62018436-RA 94 FVCPinDCNASYRRKDHLNRHILQH 118 89********************988 PP
4	zf-C2H2	16.5	2.3e-05	123	148	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp +C+k Fs + n rH++ H AUR62018436-RA 123 FRCPveNCSKEFSVQGNVSRHLKEfH 148 89*********************988 PP
5	zf-C2H2	18.7	4.7e-06	163	187	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk F+ s+L++H +H AUR62018436-RA 163 HVCEenGCGKEFKYASQLRKHAESH 187 789999***************9988 PP
6	zf-C2H2	16	3.5e-05	251	275	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C+ sF++ksn+++H + H AUR62018436-RA 251 KCTfeGCDHSFTTKSNMQQHVKAvH 275 79999***************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MGEELEERER GPIFRDIRRY YCQFCGICRS KKSLLNSHIL SHHQEELEKK REVEGEDENE 60 GQNCNNTCEE CGASFKKPAH LKQHMLSHSL ERSFVCPIND CNASYRRKDH LNRHILQHQG 120 KLFRCPVENC SKEFSVQGNV SRHLKEFHED KPEPDSGKGQ IKHVCEENGC GKEFKYASQL 180 RKHAESHGKF LLCLYYFEIC MKPFANIDCL KAHIRSCHQY VNCEVCGSKH LRKNYKRHLS 240 THGEHLPTIL KCTFEGCDHS FTTKSNMQQH VKAVHLKLRP FVCSFTGCGM RFAFKHVRDN 300 HEKSARHVYV HGDLEEFDEQ FRSRPRGGRK RKLPNVEMLL RKRISAPNQC DGVLDDSSEF 360 LSWLLSDDDS SES*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MGEELEERER GPIFRDIRRY YCQFCGICRS KKSLLNSHIL SHHQEELEKK REVEGEDENE  60
GQNCNNTCEE CGASFKKPAH LKQHMLSHSL ERSFVCPIND CNASYRRKDH LNRHILQHQG  120
KLFRCPVENC SKEFSVQGNV SRHLKEFHED KPEPDSGKGQ IKHVCEENGC GKEFKYASQL  180
RKHAESHGKF LLCLYYFEIC MKPFANIDCL KAHIRSCHQY VNCEVCGSKH LRKNYKRHLS  240
THGEHLPTIL KCTFEGCDHS FTTKSNMQQH VKAVHLKLRP FVCSFTGCGM RFAFKHVRDN  300
HEKSARHVYV HGDLEEFDEQ FRSRPRGGRK RKLPNVEMLL RKRISAPNQC DGVLDDSSEF  360
LSWLLSDDDS SES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	324	332	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-130	C2H2 family protein