PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62019043-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 218aa MW: 24505.7 Da PI: 4.8663

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62019043-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.6	2.8e-27	18	68	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr gi+KKAeELSvLCda++a+iifs tgkl+++s+ AUR62019043-RA 18 KKIDNITARQVTFSKRRRGIFKKAEELSVLCDADIALIIFSATGKLFDFSN 68 68***********************************************85 PP
2	K-box	40.3	1.3e-14	96	170	15	89
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 + + +lakL++e+ +e+R+l GedL+ +l+eL qLe+ Le+sl+++ ++K ++l+e+ ++l++k++el++ AUR62019043-RA 96 QLENSNLAKLNSEVADKNQELRKLRGEDLQGVDLEELLQLERILEDSLSRVLETKGDVLMEENQKLKQKMNELSQ 170 445667889999999999******************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MAGRSSSSSM AREKIKIKKI DNITARQVTF SKRRRGIFKK AEELSVLCDA DIALIIFSAT 60 GKLFDFSNSR VKDILARYTT YANYEKKEEE PFLELQLENS NLAKLNSEVA DKNQELRKLR 120 GEDLQGVDLE ELLQLERILE DSLSRVLETK GDVLMEENQK LKQKMNELSQ GRKPVLLLDQ 180 SDTSTIHEEG QYSSESITNG GPPLTEDDSS DTSLKLG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	1e-65	MIKC_MADS family protein