PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62019276-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family Trihelix
Protein Properties Length: 461aa    MW: 52240.4 Da    PI: 5.8624
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62019276-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.31.3e-20128224185
        trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                     +Wt++ v++Li+++ +++++   ++           +kk++W+ vs+ m + g+ +sp+qC++k+++lnkrykk++++ +++ +++++++ ++ d
  AUR62019276-RA 128 KWTDNIVRLLIAVVASVGDEGMFDAkdglkrksgmlQKKGKWKMVSNIMISNGCCVSPQQCEDKFNDLNKRYKKLNDILGREtSCQVVENPSLMD 222
                     7**************999999976556777888999*********************************************96699999999988 PP

        trihelix  84 ql 85 
                      +
  AUR62019276-RA 223 AM 224
                     87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    
MERPRLGGGF LSGMGSNGRL LDMEMPGDDL QQGQMGHPLM THQPLELHPM NMMSGIENEQ  60
PLGFVEAKGL SLKGMSMDFG KGKGISLGRS LSNNTSSEDE EPSYTGDGNG ENCNVGKDKK  120
ESPWQRMKWT DNIVRLLIAV VASVGDEGMF DAKDGLKRKS GMLQKKGKWK MVSNIMISNG  180
CCVSPQQCED KFNDLNKRYK KLNDILGRET SCQVVENPSL MDAMPHLTEK AKDEVKKILS  240
SKHLFYREMC AFHNGQRIPG CHDIDLQAHI MPLATHPNEN NVSEVHEADE NYESDSDESY  300
EDDEKNVDIK SGRMEGYYAR SNVNGGSSNF SLLPGRQDCY RVELESMFQD VAKSPAEQRS  360
LIQQRMWQLE VEKVKLEAEA LDLEKQRLKW LRFRSKKDRE LERLKLENER VKLESDWMVL  420
LLKQKEMVLG MPKSEMSLEP ISLSIDRFQG RDGIKADRHL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1396405KKDRELERLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.15e-69Trihelix family protein