PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62019397-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 175aa    MW: 20468.4 Da    PI: 8.974
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62019397-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.27.7e-27958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien +nrqvt+skRr+g++KK +EL +LCda++ +iifs tgkl++++
  AUR62019397-RA  9 KRIENRTNRQVTYSKRRQGLMKKTKELAILCDAQIGLIIFSGTGKLHTFP 58
                    79***********************************************8 PP
2K-box45.63.1e-16821621194
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                     + + e+l+ el+ L++ i+n ++++R++l edL++L l+ Lq+ e+qLe+sl+ iR   n+l+ +q+e+l++ke+ lq en ++
  AUR62019397-RA  82 HDNREELYSELQALREAIHNAEQNIRNYLVEDLGPLPLEVLQKHEHQLESSLNIIR---NQLMQQQMENLRRKEQLLQTENGNM 162
                     456899*************************************************9...69*******************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MGRGKIEMKR IENRTNRQVT YSKRRQGLMK KTKELAILCD AQIGLIIFSG TGKLHTFPES  60
SNSLEQTIQR YLNVQGIQLP VHDNREELYS ELQALREAIH NAEQNIRNYL VEDLGPLPLE  120
VLQKHEHQLE SSLNIIRNQL MQQQMENLRR KEQLLQTENG NMYHWSELFP KQGY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.24e-54MIKC_MADS family protein