PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62019870-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

ARF

Protein Properties

Length: 620aa MW: 69164.1 Da PI: 6.5234

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62019870-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74	1.8e-23	111	211	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f kvlt sd++++g +++ +k+a+e+ +++ s++l ed++g W++k+i+r++++r++lt+GW++Fv +++L +gD++vF + + AUR62019870-RA 111 FSKVLTASDTSTHGGFSVLRKHANEClppldmtQQI--PSQELAAEDLHGYPWRFKHIFRGQPRRHLLTTGWSHFVTSKRLVAGDSFVFL--RGE 201 88**************************965434..4669********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r AUR62019870-RA 202 KGELLVGVRR 211 9*****98 PP
2	Auxin_resp	99.9	3.5e-33	237	316	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F+v ++k+++++ + + vGmRfkm+fe++d +err++Gt+vgv++l+p +W++SkWrsLk AUR62019870-RA 237 ASHAVTTNTYFVVYYKPRM--SQFIVGLNKYLQSVANDYKVGMRFKMRFEGDDTPERRFTGTIVGVEELSP-QWKDSKWRSLK 316 689*************7..9*********************************************.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence
MANSMAFGQP NLSPGVRDSG GGDVLYPELW RACAGPLVEI PRVNERVYYF PQGHMEQLEA 60 STNEELNQRI HMFNLNSKIL CRVLNVHLLQ TEPLTPDEYP SEPPRPAIRS FSKVLTASDT 120 STHGGFSVLR KHANECLPPL DMTQQIPSQE LAAEDLHGYP WRFKHIFRGQ PRRHLLTTGW 180 SHFVTSKRLV AGDSFVFLRG EKGELLVGVR RVARQQSSMP SSVISSQSMH LGVLATASHA 240 VTTNTYFVVY YKPRMSQFIV GLNKYLQSVA NDYKVGMRFK MRFEGDDTPE RRFTGTIVGV 300 EELSPQWKDS KWRSLKIQWD EPTSIPRPDR VSPWEIEPFG YPAALDVVDP VVKNKKPRPS 360 VEIPGHASMS VNDSTSRNPI NDNSQGEIED CKTATAWSVF SGYATPQSAK QSGDLTEVGK 420 KTETTSSYRL FGIDLMKPST PTTVEENFVQ EPNVNGVSKE EQGRSLDSAA ESEQKSDFLK 480 ISQEKKQMLP LASSKDMPSK QGSSTRSRTK VQMQGVAVGR AVDLTTLESY DQLIDELEEL 540 FDIKGQLRPR VKWEIVFTDD EGDRMLVGDD PWLEFCSMAK KLYICSSQEV KKMSAGCKLP 600 SSSSLEGDGT VVSMESSGN*

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence

MANSMAFGQP NLSPGVRDSG GGDVLYPELW RACAGPLVEI PRVNERVYYF PQGHMEQLEA  60
STNEELNQRI HMFNLNSKIL CRVLNVHLLQ TEPLTPDEYP SEPPRPAIRS FSKVLTASDT  120
STHGGFSVLR KHANECLPPL DMTQQIPSQE LAAEDLHGYP WRFKHIFRGQ PRRHLLTTGW  180
SHFVTSKRLV AGDSFVFLRG EKGELLVGVR RVARQQSSMP SSVISSQSMH LGVLATASHA  240
VTTNTYFVVY YKPRMSQFIV GLNKYLQSVA NDYKVGMRFK MRFEGDDTPE RRFTGTIVGV  300
EELSPQWKDS KWRSLKIQWD EPTSIPRPDR VSPWEIEPFG YPAALDVVDP VVKNKKPRPS  360
VEIPGHASMS VNDSTSRNPI NDNSQGEIED CKTATAWSVF SGYATPQSAK QSGDLTEVGK  420
KTETTSSYRL FGIDLMKPST PTTVEENFVQ EPNVNGVSKE EQGRSLDSAA ESEQKSDFLK  480
ISQEKKQMLP LASSKDMPSK QGSSTRSRTK VQMQGVAVGR AVDLTTLESY DQLIDELEEL  540
FDIKGQLRPR VKWEIVFTDD EGDRMLVGDD PWLEFCSMAK KLYICSSQEV KKMSAGCKLP  600
SSSSLEGDGT VVSMESSGN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein