PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62019989-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 154aa MW: 17669.3 Da PI: 10.923

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62019989-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44	4.9e-14	15	60	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W++eEde l+d +++ G+++W++I ++ + Rt+k+c++rw + AUR62019989-RA 15 KGPWSAEEDEVLIDFINKNGPRDWSSIQSKGLLPRTGKSCRLRWVN 60 79***********************9987777********87 PP
2	Myb_DNA-binding	45.3	2e-14	71	111	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE+ + v++ ++lG++ W+tIa+++ gRt++++k++w AUR62019989-RA 71 KFSAEEERIVVELQARLGNK-WATIASHLT-GRTDNDVKNFWS 111 79****************.****9.*********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence
MMKKKGFKDQ SNIRKGPWSA EEDEVLIDFI NKNGPRDWSS IQSKGLLPRT GKSCRLRWVN 60 KLRPNLKVGC KFSAEEERIV VELQARLGNK WATIASHLTG RTDNDVKNFW SSRKKRLART 120 LNSSLQPNKK CLYQDQSKQK STVPTPQLPS SNLE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	140	RKKRLARTLNSSLQPNKKCLYQDQSKQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	1e-60	MYB family protein