PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62020118-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family C3H
Protein Properties Length: 227aa    MW: 25994.2 Da    PI: 8.7437
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62020118-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.99.8e-1085105526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      Cr f++ G C yGd+CkF+H+
  AUR62020118-RA  85 VCRAFQK-GDCTYGDSCKFSHD 105
                     6******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MNPLTLVKRI QSINAKEADL GISDEASWHA KYKDSAYVFV GGIPYDLTEG DLLARAADTG  60
WGHEEDKKSK WENDKSSYPR RERGVCRAFQ KGDCTYGDSC KFSHDEQRAA DTGWGPEEDK  120
KSKWVNDNRS NDNKRSRDAP PSHGPERKKP DIYGGRSSGG KEIADKKVED GFDTRDGGKR  180
SEYKDDRDKR PLERSRDSSP QRHRDRDDGD QRRARRDEDY HRSQRK*