PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62020244-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

E2F/DP

Protein Properties

Length: 454aa MW: 49944.9 Da PI: 4.5071

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62020244-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	77.9	9.7e-25	127	194	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l+e++e+gi++l++ a++L e + ++RRiYDi+NVLe+++liek kn i+wkg AUR62020244-RA 127 RSGRSLVLLTKKFINLIEQAEDGILDLKKTAQTL--EVQNRQKRRIYDITNVLEGIGLIEK-LKNGIQWKG 194 6789****************************..544459***************.*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MATRKAVPEK REVVLLARMK PPFADSPGDY YSFSDRLLPP PDAIVVNTPP KKRKNKLADH 60 NTESTSRTTT QGLREVLSSP FQTPVSGKCG NGQQASRNTP CDIDHPQTPM PMIGSPGENL 120 TPGGPCRSGR SLVLLTKKFI NLIEQAEDGI LDLKKTAQTL EVQNRQKRRI YDITNVLEGI 180 GLIEKLKNGI QWKGPSVSRP GEVSNGVASL QADIENLSME ERKLDERIRE IQERLRDITE 240 DTNNQKWLFV SEEDMKALPC FQDETLIAIK APHGTTLEVP EPDEGVDHPQ RKYRIVLRST 300 MGPIDVYLVS QFEEKVEETN GAETLQSLPS TSGCNDLSNA MAENENSGNQ IELHGQDAHR 360 MSSDGSVPQD LSGIMKIVPE VYNDADYWLL SDADVSISDM WGAESGVDWD ELGIVPEDYA 420 VEDNSTQQQP QSLLSLLTSA TGVPPAIADS TGR*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MATRKAVPEK REVVLLARMK PPFADSPGDY YSFSDRLLPP PDAIVVNTPP KKRKNKLADH  60
NTESTSRTTT QGLREVLSSP FQTPVSGKCG NGQQASRNTP CDIDHPQTPM PMIGSPGENL  120
TPGGPCRSGR SLVLLTKKFI NLIEQAEDGI LDLKKTAQTL EVQNRQKRRI YDITNVLEGI  180
GLIEKLKNGI QWKGPSVSRP GEVSNGVASL QADIENLSME ERKLDERIRE IQERLRDITE  240
DTNNQKWLFV SEEDMKALPC FQDETLIAIK APHGTTLEVP EPDEGVDHPQ RKYRIVLRST  300
MGPIDVYLVS QFEEKVEETN GAETLQSLPS TSGCNDLSNA MAENENSGNQ IELHGQDAHR  360
MSSDGSVPQD LSGIMKIVPE VYNDADYWLL SDADVSISDM WGAESGVDWD ELGIVPEDYA  420
VEDNSTQQQP QSLLSLLTSA TGVPPAIADS TGR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	1e-119	E2F/DP family protein