PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62020245-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

E2F/DP

Protein Properties

Length: 493aa MW: 54697 Da PI: 4.6898

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62020245-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	86.4	2.1e-27	142	207	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg AUR62020245-RA 142 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 207 6899****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MSTPKATITN HQSXXXXXXX XXLKRQLPFT SMKPPFVPPP GDYHRFSDNR APLPPDTETI 60 VVKTPPMKRK SDAAEYDAES SDWTTSPGYT EVISSPLQTP VSGKAGKGRG SRISKCNRAG 120 PQTPMSNIGS PGNNLTPVGP CRYDSSLGLL TKKFINLIKH AEDGILDLNK AADTLEVQKR 180 RIYDITNVLE GIGLIEKKLK NRIQWKGLDV SRPGEVDDSV TSLQADVENL SMEERRLDEQ 240 IREMQERLRE MSEDENNQKW LFVTEEDIKG LPCFQSETLI AIKAPHGTTL EVPDPDEASS 300 GAVDYQQRRY RIVLRSTMGP IDVYLVSQFE EKFEEISGAE PPLSMPSTSG CDEGTTAAAK 360 EESRDDETEM HGQETHRICS DANDQQDFVS GIMKIVPEVD SDVDYWLLSD GDVSITDMWR 420 TDLIAGVEWN DLGTIHEDYA VANVGTPQPQ SPPPSATEVL PNNMTGSQRI GHKMASRKLL 480 DHVQYCSVHK VS*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MSTPKATITN HQSXXXXXXX XXLKRQLPFT SMKPPFVPPP GDYHRFSDNR APLPPDTETI  60
VVKTPPMKRK SDAAEYDAES SDWTTSPGYT EVISSPLQTP VSGKAGKGRG SRISKCNRAG  120
PQTPMSNIGS PGNNLTPVGP CRYDSSLGLL TKKFINLIKH AEDGILDLNK AADTLEVQKR  180
RIYDITNVLE GIGLIEKKLK NRIQWKGLDV SRPGEVDDSV TSLQADVENL SMEERRLDEQ  240
IREMQERLRE MSEDENNQKW LFVTEEDIKG LPCFQSETLI AIKAPHGTTL EVPDPDEASS  300
GAVDYQQRRY RIVLRSTMGP IDVYLVSQFE EKFEEISGAE PPLSMPSTSG CDEGTTAAAK  360
EESRDDETEM HGQETHRICS DANDQQDFVS GIMKIVPEVD SDVDYWLLSD GDVSITDMWR  420
TDLIAGVEWN DLGTIHEDYA VANVGTPQPQ SPPPSATEVL PNNMTGSQRI GHKMASRKLL  480
DHVQYCSVHK VS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22220.2	1e-153	E2F/DP family protein