PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62020649-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 274aa MW: 30358.3 Da PI: 4.8725

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62020649-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.5	6e-12	29	104	2	79
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 Wt q l L++ +e + +++ + ++W +s+ + + g+ ++++qC+ kw++l +y +ke++ + s+s s + AUR62020649-RA 29 WTAQDMLILVNEIAAVEGDWKNSLSTHQKWTIISETCTALGVGKTANQCRRKWQSLLADYNLVKEWKLN--SGSDSYW 104 ******************************************************************987..3444455 PP
2	Myb_DNA-binding	21.6	5.1e-07	29	85	4	48
S-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg.........tWktIartmg...kgRtlkqcksrwqkyl 48 WT+++ ++lv+ ++ g+ W+ I++t g+t++qc+ +wq++l AUR62020649-RA 29 WTAQDMLILVNEIAAVEGDwknslsthqKWTIISETCTalgVGKTANQCRRKWQSLL 85 ***************99*************99999***********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MREADVGQLA ESISGSRCTR SHLQAAAVWT AQDMLILVNE IAAVEGDWKN SLSTHQKWTI 60 ISETCTALGV GKTANQCRRK WQSLLADYNL VKEWKLNSGS DSYWSLGCDR RKEAGLPLEF 120 DKDLYKAMED FMKASDRADT DPECDPDAGE VDVLDAEESG PKPKKRRRRS IPKKRLSEGR 180 KQPATEVEHV IPEPPVAEDM EQILAAKLME NTELIHAILA GNVTENVDED LTSVRNEESL 240 KTENVIRKAD KLVACLGDLA KNLEHLCGAV EKG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	167	PKPKKRR
2	164	169	KKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	1e-44	Trihelix family protein