PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62020997-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 383aa MW: 44411.4 Da PI: 7.3722

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62020997-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.9	4.6e-07	67	88	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF+ + +Lk+H+ +H AUR62020997-RA 67 TCEECGASFKKPAHLKQHMLSH 88 6*******************99 PP
2	zf-C2H2	21.5	6.1e-07	114	138	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp dC+ s++rk++L+rHi H AUR62020997-RA 114 FVCPinDCNASYRRKDHLNRHILQH 138 89********************988 PP
3	zf-C2H2	19.4	2.9e-06	183	207	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk F+ s+L++H tH AUR62020997-RA 183 HVCEenGCGKEFKYASQLRKHAETH 207 789999***************9999 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MGEELEEREI GPIFRDIRRY YCEFCSICRS KKSLINSHIL SHHQEELEKK REVEGEDKNE 60 GQNCNNTCEE CGASFKKPAH LKQHMLSHSL EDGGPPEKLR QAQPLDTHYY KRSFVCPIND 120 CNASYRRKDH LNRHILQHQG KLFKCPIENC CKEFSVQGNV SRHLKEFHED KPEPDTGKGE 180 FKHVCEENGC GKEFKYASQL RKHAETHGKF LLCLCYFEMF VVLVVKLTED ITCSVLESSE 240 TFCADPSCMK PFANVDCLKA HIRSCHQYVN CEKSNMQQHV KAVHLKLRPF ICSFTGCGMR 300 FAFKHVRDNH EKSTRHVYVH GDLEEFDEQF RSRPRGGRKR KLPNIEMLMR KRISAPNQCD 360 GVLDDSSEFL SWLLSDDDNS ES*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MGEELEEREI GPIFRDIRRY YCEFCSICRS KKSLINSHIL SHHQEELEKK REVEGEDKNE  60
GQNCNNTCEE CGASFKKPAH LKQHMLSHSL EDGGPPEKLR QAQPLDTHYY KRSFVCPIND  120
CNASYRRKDH LNRHILQHQG KLFKCPIENC CKEFSVQGNV SRHLKEFHED KPEPDTGKGE  180
FKHVCEENGC GKEFKYASQL RKHAETHGKF LLCLCYFEMF VVLVVKLTED ITCSVLESSE  240
TFCADPSCMK PFANVDCLKA HIRSCHQYVN CEKSNMQQHV KAVHLKLRPF ICSFTGCGMR  300
FAFKHVRDNH EKSTRHVYVH GDLEEFDEQF RSRPRGGRKR KLPNIEMLMR KRISAPNQCD  360
GVLDDSSEFL SWLLSDDDNS ES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	341	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-102	C2H2 family protein