PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62021239-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 161aa MW: 18178.6 Da PI: 6.4949

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62021239-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.6	5.6e-40	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lr++C++dC++ pyfp+++pk+f+nvhk++Gasn+ ++l+++p + reda+++l yeA++r++dPvyG+v+vi +lqq+l+ ++++l+ AUR62021239-RA 6 RCAACKYLRKRCPSDCIFLPYFPSNDPKRFENVHKIYGASNIARMLQRIPVHLREDAANCLHYEARCRVEDPVYGCVKVIYQLQQELNMAQNQLV 100 6********************************************************************************************** PP DUF260 96 llkee 100 ++++e AUR62021239-RA 101 KAQSE 105 *9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence
MANHSRCAAC KYLRKRCPSD CIFLPYFPSN DPKRFENVHK IYGASNIARM LQRIPVHLRE 60 DAANCLHYEA RCRVEDPVYG CVKVIYQLQQ ELNMAQNQLV KAQSEIALVL NVYGPPEDYI 120 SGPQTSEEDL SSSFENYYTQ PNIHGHLPLD PSSLGSLDAM *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-45	LBD family protein