PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62021521-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

Trihelix

Protein Properties

Length: 383aa MW: 44656.9 Da PI: 4.6534

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62021521-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.4	3.7e-13	89	173	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++q + +L+e+ e+ +l+r++l+ +W ev++++ +++ +r C+++++ l+++yk++k+ ++ ss++++f++++ AUR62021521-RA 89 WSEQGTFVLLEIWGERFLQLGRSSLRSEDWNEVAERVsEATRSKRCVSDCRSRLNALKMKYKREKAKVIGL-GIGSSKWVFFKKMD 173 ***********************************55566799*******************997.666779*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MDRRSNYPYS RRSKPQKSYA EEEDDDDEND VVLGAIDDSD EEEDDDINDE DFNGPGRRRT 60 STRHRQKQRK LSTWNYHSTP KSSGMDSDWS EQGTFVLLEI WGERFLQLGR SSLRSEDWNE 120 VAERVSEATR SKRCVSDCRS RLNALKMKYK REKAKVIGLG IGSSKWVFFK KMDVLMTMSP 180 RQLQQQEQCG LACGVDSGEF VFMNPRVYLD HSNASDEMRD SPGNSEMLSE SIKRVGEIYE 240 KMEDSKKQHM EELDRMREEF QRELELQKKE MLDRTKVEIA KLGQKDDQEQ DSDCSVENVM 300 LAENVYYYMM VVYALALEAT NILFAEGMLV VFCILFKFAF CAQIRGHNLR KSDDNVIYSG 360 CYWNFREGEY DEDCRMFFDG LA*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MDRRSNYPYS RRSKPQKSYA EEEDDDDEND VVLGAIDDSD EEEDDDINDE DFNGPGRRRT  60
STRHRQKQRK LSTWNYHSTP KSSGMDSDWS EQGTFVLLEI WGERFLQLGR SSLRSEDWNE  120
VAERVSEATR SKRCVSDCRS RLNALKMKYK REKAKVIGLG IGSSKWVFFK KMDVLMTMSP  180
RQLQQQEQCG LACGVDSGEF VFMNPRVYLD HSNASDEMRD SPGNSEMLSE SIKRVGEIYE  240
KMEDSKKQHM EELDRMREEF QRELELQKKE MLDRTKVEIA KLGQKDDQEQ DSDCSVENVM  300
LAENVYYYMM VVYALALEAT NILFAEGMLV VFCILFKFAF CAQIRGHNLR KSDDNVIYSG  360
CYWNFREGEY DEDCRMFFDG LA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	5e-76	Trihelix family protein