PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62021755-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

LBD

Protein Properties

Length: 245aa MW: 27562.2 Da PI: 6.7282

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62021755-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.4	3.6e-36	10	107	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+ Cvlapyfpa+q+k f nvhklFG+ +++kll+ lp++++ +am+s++ +A++r r Pv+G++gvi++l +q+ q +ael AUR62021755-RA 10 ACAACKYQRRKCAPTCVLAPYFPADQHKMFLNVHKLFGVMKIQKLLHVLPPSTHGEAMASIIHHADIRDRYPVHGCLGVIHALLNQIWQCQAELF 104 7********************************************************************************************97 PP DUF260 96 llk 98 ++ AUR62021755-RA 105 DVQ 107 776 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MTLKGGTNQA CAACKYQRRK CAPTCVLAPY FPADQHKMFL NVHKLFGVMK IQKLLHVLPP 60 STHGEAMASI IHHADIRDRY PVHGCLGVIH ALLNQIWQCQ AELFDVQSML KVFRQQHEQQ 120 QQVPSDGVPK EDFNGASQLQ MEMANMVPVS QSHSYSSSSS PCNPTYLDVK VTSVNSLWNQ 180 QGEGNDSNNS ENEKIMPAQS KMVVTPEPLA VQKESFQNYD MHPYFDTIDD RQSYVDTKDA 240 YESR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	4e-41	LBD family protein