PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62022236-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family GRAS
Protein Properties Length: 435aa    MW: 49889.1 Da    PI: 7.4621
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62022236-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.83.3e-109144342374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaal............. 81 
                     ++lL++cAe +s +++  a++lL+ +s+  a + gd+++Rl+ yf +AL++r++r   s++   ++ps + + +    la +             
  AUR62022236-RA  14 RQLLVTCAELISRSEFLSANRLLSLISTDfALQFGDSTERLVYYFCKALRERINRyLLSTTTCVMNPSINIPVT----LAHHqqrpifssspspq 104
                     689************************99899999********************3223333333433333322....2222345677789**** PP

            GRAS  82 ..........................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTg 146
                                                 +++v+P+++f+hltaNqaIleaveg   +Hi+D+d+++G+QWp+Llqa+ +R+    ++ p++RiTg
  AUR62022236-RA 105 iilpnnqiprpsriveqdvttryssyLSLNQVTPFIRFTHLTANQAILEAVEGYASIHILDMDVMHGVQWPPLLQAIMERSstlgRSCPTIRITG 199
                     *******************998876444*****************************************************8877779******* PP

            GRAS 147 vgspesgskeeleetgerLakfAeelgvpfefnvl.........vak.rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLkl 230
                      ++    + + l +tg+rL++fAe+lg++fef  l         +++  +++l  ++L++++ +Eala+n+   lhrll+ + +++s  +++L+ 
  AUR62022236-RA 200 AAR----DPTILDRTGDRLRRFAESLGIEFEFCDLvlydsevvdHSEaVIHALMDHRLKFDQvEEALAINCGDYLHRLLR-EYDTRS-LRRFLHK 288
                     ***....9*************************99777777433222234444556678888*****************5.455555.699**** PP

            GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                     vk+l+Pkv+++ e+eadhn++ Fl+rf+eal++y a+fdslea+lp++s+er+ vE++++g+ei++vv   g++r+ rh+++e+W++ ++++GFk
  AUR62022236-RA 289 VKTLNPKVLTLGEREADHNHPLFLRRFVEALDHYGAVFDSLEATLPPQSRERVAVEEAWFGEEIKDVVGEDGERRKDRHQRFESWEMVMRSSGFK 383
                     *********************************************************************************************** PP

            GRAS 326 pvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                     +++ls +  +qaklllr ++ s+gy+++  ++++l+lgWk+rpL+svS+W+
  AUR62022236-RA 384 SLALSPFSLSQAKLLLRLHYpSEGYQLQvVKKHCLFLGWKNRPLYSVSSWQ 434
                     ****************************7889******************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    
LLSTSPQSSV IHPRQLLVTC AELISRSEFL SANRLLSLIS TDFALQFGDS TERLVYYFCK  60
ALRERINRYL LSTTTCVMNP SINIPVTLAH HQQRPIFSSS PSPQIILPNN QIPRPSRIVE  120
QDVTTRYSSY LSLNQVTPFI RFTHLTANQA ILEAVEGYAS IHILDMDVMH GVQWPPLLQA  180
IMERSSTLGR SCPTIRITGA ARDPTILDRT GDRLRRFAES LGIEFEFCDL VLYDSEVVDH  240
SEAVIHALMD HRLKFDQVEE ALAINCGDYL HRLLREYDTR SLRRFLHKVK TLNPKVLTLG  300
EREADHNHPL FLRRFVEALD HYGAVFDSLE ATLPPQSRER VAVEEAWFGE EIKDVVGEDG  360
ERRKDRHQRF ESWEMVMRSS GFKSLALSPF SLSQAKLLLR LHYPSEGYQL QVVKKHCLFL  420
GWKNRPLYSV SSWQ*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-117GRAS family protein