PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62022366-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28764.6 Da    PI: 9.5954
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62022366-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.27.1e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g++ye+s+
  AUR62022366-RA  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRVYEFSN 59
                    79***********************************************95 PP
2K-box104.31.6e-34741714100
           K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     s+g++ ++e +a+++q+e+akL+++i+++q+++R+l+Ge+L+sL++keL+q+e++Le+++++iRskK+e ll++ie  qk+e el++en  Lr+k
  AUR62022366-RA  74 SDGTNtVTEINAQYYQHESAKLRNQIQMMQNSNRNLMGECLSSLTVKELKQVENRLERGISRIRSKKHEALLAEIEFRQKREAELENENSILRAK 168
                     455556999************************************************************************************** PP

           K-box  98 lee 100
                     ++e
  AUR62022366-RA 169 IAE 171
                     986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEIALIVFSS RGRVYEFSNN  60
NIRSTIEKYK KANSDGTNTV TEINAQYYQH ESAKLRNQIQ MMQNSNRNLM GECLSSLTVK  120
ELKQVENRLE RGISRIRSKK HEALLAEIEF RQKREAELEN ENSILRAKIA EVERLQQLNM  180
MPSETLDFVN PFVPRDHLLA ENMLQNCSEF ANANSEKKLF HLRFETVENS DAGKSKNAGS  240
SEQVQTKNGT *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-101MIKC_MADS family protein