PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62022498-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family LBD
Protein Properties Length: 211aa    MW: 23102.4 Da    PI: 4.769
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62022498-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26080.13.5e-255106197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C ++C l++ +     p +q +++ +v k+FG+s +  ll+++p+  ++ +++sl+yeA+ r+ +Pv+G++g++++++++l+++
  AUR62022498-RA   5 SCNGCRVLRKGCGENCLLRQSLtfidsPYSQCNATVFVSKFFGRSSLFYLLESAPPALHPVVFRSLLYEACDRTINPVSGVIGLLFTGKWNLCES 99 
                     6********************999*********************************************************************** PP

          DUF260  91 kaelall 97 
                     +++++l 
  AUR62022498-RA 100 AVDIVLK 106
                     9998765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MISSSCNGCR VLRKGCGENC LLRQSLTFID SPYSQCNATV FVSKFFGRSS LFYLLESAPP  60
ALHPVVFRSL LYEACDRTIN PVSGVIGLLF TGKWNLCESA VDIVLKGGVL KPLPEFITRF  120
SPENSNSGED SELQLNLSSR SFGDVEGDLS LDLDLWLTTT TSRVVSPRMD RMKRKKSRCL  180
ELEMSGTTSC ESGSSAEVEE FDVVDLSLSL *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-48LBD family protein