PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62022815-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 425aa MW: 46382 Da PI: 5.1727

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62022815-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.5	1.5e-18	39	84	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd +l ++v ++G ++W++Iar ++ gR++k+c++rw + AUR62022815-RA 39 RGPWSPEEDAILSELVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 84 89****************************.*********985 PP
2	Myb_DNA-binding	49.8	7.8e-16	91	135	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++++eEd+ ++ a++ +G++ W+ Ia+ + gRt++ +k++w++ AUR62022815-RA 91 RKPFSEEEDQTIISAHAIHGNK-WACIAKLLS-GRTDNAIKNHWNST 135 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MSDQPKTTED PNDLTLPDAA ADATEADDLP AAPSSSRVRG PWSPEEDAIL SELVSKFGAR 60 NWSLIARGIP GRSGKSCRLR WCNQLDPCVK RKPFSEEEDQ TIISAHAIHG NKWACIAKLL 120 SGRTDNAIKN HWNSTLRRRY DFGKSVGDSS FDRNKASSEE TVSGETNSFK AYDGKHDVNM 180 VVNQCLQPDY QSSVNENLNQ SVQPEIQPSI MYENPPIVVA YPPMVAYPPF YAHYAEPIEP 240 PKPSRPVARV GAFSVYQPSS NLTPAAPPPK PVPVQGPLVN AFQPDFGISK FLDGVQCEPI 300 IPLRCGHGCC STPTGAKTQN SLLGPEFIEY EEPPSFSSHE LASIATDLNN IAWIKSGLDS 360 GCTRRMDDPI QKRDIQGSDN SGQCAQTNNV RFEEGRTKLV GMMTEVLSTQ IPRQTVALPA 420 EVGV*

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MSDQPKTTED PNDLTLPDAA ADATEADDLP AAPSSSRVRG PWSPEEDAIL SELVSKFGAR  60
NWSLIARGIP GRSGKSCRLR WCNQLDPCVK RKPFSEEEDQ TIISAHAIHG NKWACIAKLL  120
SGRTDNAIKN HWNSTLRRRY DFGKSVGDSS FDRNKASSEE TVSGETNSFK AYDGKHDVNM  180
VVNQCLQPDY QSSVNENLNQ SVQPEIQPSI MYENPPIVVA YPPMVAYPPF YAHYAEPIEP  240
PKPSRPVARV GAFSVYQPSS NLTPAAPPPK PVPVQGPLVN AFQPDFGISK FLDGVQCEPI  300
IPLRCGHGCC STPTGAKTQN SLLGPEFIEY EEPPSFSSHE LASIATDLNN IAWIKSGLDS  360
GCTRRMDDPI QKRDIQGSDN SGQCAQTNNV RFEEGRTKLV GMMTEVLSTQ IPRQTVALPA  420
EVGV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	5e-85	MYB family protein