PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62022912-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MYB

Protein Properties

Length: 258aa MW: 28420.8 Da PI: 7.587

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62022912-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58	2.2e-18	17	62	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT++Ed l+++v q+G+++W++I++ ++ gR++k+c++rw + AUR62022912-RA 17 KGSWTPQEDATLKKLVDQHGPRNWTLISEGIP-GRSGKSCRLRWCNQ 62 799***************************.*********985 PP
2	Myb_DNA-binding	57.7	2.8e-18	71	113	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede++v+a+k +G++ W+tIa+ ++ gRt++ +k++w++ AUR62022912-RA 71 AFSPTEDEIIVQAHKAHGNR-WATIAKLLP-GRTDNAIKNHWNST 113 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MGTKNDVQNG VVKDRVKGSW TPQEDATLKK LVDQHGPRNW TLISEGIPGR SGKSCRLRWC 60 NQLSPDVQHR AFSPTEDEII VQAHKAHGNR WATIAKLLPG RTDNAIKNHW NSTLRRKRDP 120 QVGTELSESK RQRVEVAVSS ESDSGVVKKE VSSGVVSEQE EDGGVETVLT LLPPGKVMDV 180 PRGGEREGED QVRKGDDEGE IKKLMRCTVG RDDTCLINVM QNMIAAEVKS YIDRLDLQPK 240 SGDDNGPKSD SSAHHSK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	3e-54	MYB family protein