PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62022916-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family Trihelix
Protein Properties Length: 262aa    MW: 29983.1 Da    PI: 9.9004
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62022916-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.41e-141394186
        trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergfer..spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                    +W+++ + +Liea  e+  r++rg+l++++W ev++++ + g++r  + +qCk++++ ++k+yk +k  +        st+++f++l+
  AUR62022916-RA 13 CWSEESTAVLIEAWGERYLRSNRGNLRQNDWNEVADAVNSAGITRrkTDIQCKNRIDTIKKKYKVEKVKSPP------STWRFFERLD 94
                    7*****************************************97766899**************99887775......58****9996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MAAPKQSGGR DDCWSEESTA VLIEAWGERY LRSNRGNLRQ NDWNEVADAV NSAGITRRKT  60
DIQCKNRIDT IKKKYKVEKV KSPPSTWRFF ERLDFLIGNV TSSAAVKSSL NSSESTQSDE  120
DGEAVEMVEE RERETAVKEL ARAVVKFGEE LELQRMNMFV DAQIQLERLK RSNKSSASTA  180
MSDTTRVLKQ ARYYSRDHTS FSGLKMKDSF PAQVVFRRSI TLLLLCDVLY MTLEGWKFCG  240
NWFRRLRSVP RCVPGKIRKL E*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-34Trihelix family protein