PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62023118-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CO-like

Protein Properties

Length: 368aa MW: 40883.5 Da PI: 5.0727

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62023118-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.1	3.3e-07	16	57	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r C+++ + + + +C+ ++ +lC +C +H H++ AUR62023118-RA 16 RACDTCRSAPCTVYCKADSAYLCTSCDARIHAAnqlasrHER 57 67*****************************65667777765 PP
2	zf-B_box	29.5	1.5e-09	58	103	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC++C +H+ H +vp+ AUR62023118-RA 58 VWVCEACERAPAAFLCKADAASLCATCDADIHSAnplarrHHRVPI 103 689*****************************66899999877775 PP
3	CCT	70.7	3.7e-24	298	341	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eK+k+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ AUR62023118-RA 298 REARVMRYREKKKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 341 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MMKKEIPGGD TNSWARACDT CRSAPCTVYC KADSAYLCTS CDARIHAANQ LASRHERVWV 60 CEACERAPAA FLCKADAASL CATCDADIHS ANPLARRHHR VPIMPVGCTY GPSDGRMSED 120 GFLDLAEGDD QTTDHEGDED EAASWLLLNP GKNSNNQTTN GFLTGRGEVD EYLDLFEYNS 180 GAADNQFCEQ YNQQQEFSVP EKSCEGDSVV PVQCREGKDH QIQYQNFLFG MECETKSEYN 240 YNTPSSHSVS VSSLDVGVVP ESTMSDMSVS HPRPPKGTID LFSSPPMQVP TQLSPLDREA 300 RVMRYREKKK NRKFEKTIRY ASRKAYAETR PRIKGRFAKR TDVEAEMDQM FTNSLMSDGG 360 YGIVPSF*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MMKKEIPGGD TNSWARACDT CRSAPCTVYC KADSAYLCTS CDARIHAANQ LASRHERVWV  60
CEACERAPAA FLCKADAASL CATCDADIHS ANPLARRHHR VPIMPVGCTY GPSDGRMSED  120
GFLDLAEGDD QTTDHEGDED EAASWLLLNP GKNSNNQTTN GFLTGRGEVD EYLDLFEYNS  180
GAADNQFCEQ YNQQQEFSVP EKSCEGDSVV PVQCREGKDH QIQYQNFLFG MECETKSEYN  240
YNTPSSHSVS VSSLDVGVVP ESTMSDMSVS HPRPPKGTID LFSSPPMQVP TQLSPLDREA  300
RVMRYREKKK NRKFEKTIRY ASRKAYAETR PRIKGRFAKR TDVEAEMDQM FTNSLMSDGG  360
YGIVPSF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-132	CO-like family protein