PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62023163-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 252aa MW: 28738.8 Da PI: 9.1129

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62023163-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.8	1.1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s AUR62023163-RA 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	97.1	2.6e-32	83	172	10	99
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ es+++e+ kLk++ e+Lqr+qR+llGedL++L++keL qLe+qLe+slk+iRs+K++ +++q+ +lq+ke++l e+nk+L+++l+ AUR62023163-RA 83 PSKELESSYREYLKLKARHESLQRTQRNLLGEDLGPLNVKELDQLERQLETSLKQIRSTKTQSMVDQLTDLQHKEHALMEANKSLKTELD 172 567899********************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSG 60 PSMLKTLERY QKCSYGGVEI NKPSKELESS YREYLKLKAR HESLQRTQRN LLGEDLGPLN 120 VKELDQLERQ LETSLKQIRS TKTQSMVDQL TDLQHKEHAL MEANKSLKTE LDRIMIKDAQ 180 YRQSWDGTDQ NVHYGQQHAQ SQGLLNFQPL GCNPTLQIGY NPETTEQMSV ATTHAQVPGF 240 LPGWMQGGCF S*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	1e-118	MIKC_MADS family protein