PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62023427-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family HD-ZIP
Protein Properties Length: 229aa    MW: 25551.9 Da    PI: 8.6084
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62023427-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.73.5e-1779133256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++ keq+ +Le++F ++ +++++++  LA++++L  rqV vWFqNrRa+ k
  AUR62023427-RA  79 RKKLRLCKEQILVLEQAFSEHTTLNTKQKVALATEVNLRPRQVEVWFQNRRARTK 133
                     66777889*********************************************98 PP
2HD-ZIP_I/II115.33.6e-3779168191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl keq+ +LE+ F+e+++L++++Kv+la+e++l+prqv+vWFqnrRARtk kq+E+d+e+Lk+ +++l+een+rL++ev+eLr +l
  AUR62023427-RA  79 RKKLRLCKEQILVLEQAFSEHTTLNTKQKVALATEVNLRPRQVEVWFQNRRARTKFKQTESDCEQLKKYCETLTEENKRLQNEVQELR-AL 168
                     69*************************************************************************************9.44 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MNTLNNTLAI IPRINKGLIS KQPIDIIDLE EEEKTSKVGS PKSTLSCVTG KRFGGDREVI  60
SDEEEGGNRG GSESSGGERK KLRLCKEQIL VLEQAFSEHT TLNTKQKVAL ATEVNLRPRQ  120
VEVWFQNRRA RTKFKQTESD CEQLKKYCET LTEENKRLQN EVQELRALKF SPEHSMMEAN  180
HPPTTLTMCP SCKNVSFSSS SATTKTPAGE TGRSLLGVFH QRTPLTIQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128136RRARTKFKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.15e-54HD-ZIP family protein