PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62023447-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family ARF
Protein Properties Length: 628aa    MW: 70319.3 Da    PI: 6.9162
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62023447-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.78.1e-2293193198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+lt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W +k i+r++++r++lt+GW+ Fv +++L +gD +vF +   +++
  AUR62023447-RA  93 FVKILTASDTSTHGGFSVLRKHANEClppldMSQPTPTQELVATDLHGYEWHFKQIFRGQPRRHLLTTGWSTFVTSKRLAAGDAFVFLR--GDNG 185
                     89*****************************77777888*************************************************3..3777 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                      l+v+v+r
  AUR62023447-RA 186 DLRVGVRR 193
                     78**9998 PP
2Auxin_resp99.35.5e-33219298183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a ha++t ++F+v+Y+Pr+  s+F+v v+k+++a+++k+s+GmRf m+fe++d +err++Gt+v v+d++p +W++SkWrsLk
  AUR62023447-RA 219 ARHAVNTCTMFTVYYKPRS--SQFIVGVNKYLEAVNHKFSIGMRFNMKFEGDDTPERRFTGTIVWVEDVSP-QWSGSKWRSLK 298
                     6799**************6..9*************************************************.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    
MARRQAVPGD CLQRKPIILL LEATTNQELN QQIPRFNLPS KILCQVVNIE LKAEPETDEV  60
YAQIALIPEK EEDEFKSSDS TVNEPPRPKV QSFVKILTAS DTSTHGGFSV LRKHANECLP  120
PLDMSQPTPT QELVATDLHG YEWHFKQIFR GQPRRHLLTT GWSTFVTSKR LAAGDAFVFL  180
RGDNGDLRVG VRRLVRQQSP MPPSVISSQS MHLGVLATAR HAVNTCTMFT VYYKPRSSQF  240
IVGVNKYLEA VNHKFSIGMR FNMKFEGDDT PERRFTGTIV WVEDVSPQWS GSKWRSLKVQ  300
WDEAAAFHRP DKVSPWEIEP FVASIPANPS PPPVSKTKRS RPSDLSISET AGGSPVSNFW  360
YVSVHTNDFS SPRNQQDNAW SPNHARNSPR FFVDKKDDSK APSVHSCSTP SAYPYLAPSR  420
LRPDHSEQVN SGGKSPGSCR LFGIELRNNS HVAPTLEKVT VCPEKLSNEA KFTETGAEKV  480
DEVLNTDVEP LKEQNQVNSD VSQDESLTKT FSQSSTRSRT KVQMHGVAVG RAVDLTILEG  540
YDELICELEK MFDIKGELKT RNKWAVVFTD DEGDMMLVGD DPWLEFCKMV RKIFIYSSEE  600
VKKLSSKSRL SSPSVDEGTV LSLGTEE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0ARF family protein