PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62023601-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

ARF

Protein Properties

Length: 554aa MW: 60662.6 Da PI: 6.2585

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62023601-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	64.6	1.5e-20	111	212	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 f+k lt sd+++ g +++p+ +ae++ + ++ + l++ d +g +W +++iyr++++r++lt+GW++Fv++++L ++D vF ++ AUR62023601-RA 111 FVKSLTASDANNGGGFSVPRYCAESIfpalnfeDDPPVQ--NLRIFDVHGVEWPFRHIYRGTPRRHLLTSGWSKFVNSKNLVANDCAVFI--KNk 201 89***************************96555556..6999*****************************************..454 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 +++l+v+++r AUR62023601-RA 202 VTGQLFVGIRR 212 89999**98 PP
2	Auxin_resp	56.6	1.2e-19	257	342	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsser.rl.sGtvvgvsd.ldpvrWpnSkWrsLk 83 a+++a+++ +FevvY+ r + +eFvv +ekve+a v + G R+kma + ed + ++ Gtv++v d+ Wp+S+Wr+L+ AUR62023601-RA 257 AIQKAASNVPFEVVYYSRGGLPEFVVAAEKVEEAWGVFWNNGIRVKMARQIEDGGPKpTWfNGTVASVVPgPDQGPWPGSPWRMLQ 342 6788999********************************************86551558*9875268999******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence
LSAALAKIIQ GSLIHVPKKD SRVYFFPQGY LEQALNPVSL SSIDTSRSFV ECRVLDRSFY 60 ADTVTDEVFV KFRLMPLKSS SRFVVEGSGS VGNGDDGVEE DEESENVIES FVKSLTASDA 120 NNGGGFSVPR YCAESIFPAL NFEDDPPVQN LRIFDVHGVE WPFRHIYRGT PRRHLLTSGW 180 SKFVNSKNLV ANDCAVFIKN KVTGQLFVGI RRAFKPLPKP NARVSSWVVL PPPKPRTIGV 240 FSRNVRGRVP EDAIVDAIQK AASNVPFEVV YYSRGGLPEF VVAAEKVEEA WGVFWNNGIR 300 VKMARQIEDG GPKPTWFNGT VASVVPGPDQ GPWPGSPWRM LQVAWDEADK MEEFKMLSPW 360 QLECIAPTPP PIHPTFNPGK KLKGVQNSVM LADGKGDISF PPIEFGPMMM GPLSPSFINY 420 NNFPAGMQGA RQFPSIYLPS SSTTMNDSSH QGGPDDNMDS SMSQKVEGVS TNPNVASSSC 480 ETPSPDSHNS VQLFGSTSTG RHSCNVTRQG VTSFQLFGKT IHMVQPLADT DDISCTECDA 540 ESQRPPVMKP SAM*

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence

LSAALAKIIQ GSLIHVPKKD SRVYFFPQGY LEQALNPVSL SSIDTSRSFV ECRVLDRSFY  60
ADTVTDEVFV KFRLMPLKSS SRFVVEGSGS VGNGDDGVEE DEESENVIES FVKSLTASDA  120
NNGGGFSVPR YCAESIFPAL NFEDDPPVQN LRIFDVHGVE WPFRHIYRGT PRRHLLTSGW  180
SKFVNSKNLV ANDCAVFIKN KVTGQLFVGI RRAFKPLPKP NARVSSWVVL PPPKPRTIGV  240
FSRNVRGRVP EDAIVDAIQK AASNVPFEVV YYSRGGLPEF VVAAEKVEEA WGVFWNNGIR  300
VKMARQIEDG GPKPTWFNGT VASVVPGPDQ GPWPGSPWRM LQVAWDEADK MEEFKMLSPW  360
QLECIAPTPP PIHPTFNPGK KLKGVQNSVM LADGKGDISF PPIEFGPMMM GPLSPSFINY  420
NNFPAGMQGA RQFPSIYLPS SSTTMNDSSH QGGPDDNMDS SMSQKVEGVS TNPNVASSSC  480
ETPSPDSHNS VQLFGSTSTG RHSCNVTRQG VTSFQLFGKT IHMVQPLADT DDISCTECDA  540
ESQRPPVMKP SAM*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	9e-97	ARF family protein