PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62023627-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 405aa MW: 44627.9 Da PI: 9.4467

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62023627-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.3e-06	174	196	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+Cg++F ++nL+ H+ + H AUR62023627-RA 174 SCPHCGEVFMKPENLELHQAVrH 196 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MRNILTCKHL EVEQQPQQEQ ASLSKKKKQQ KKKLAEKPAI QEENSKKNKK MKCSGSLCNN 60 TKVMQRPEPA SPETLQRKSR GGPTHASTST TSSSSHEGSN RSIKSPVLSD LSNNNTNNNG 120 VLLKSSSSNS TTAANYSIKG IPFRRLSGCY ECRMVVDPVL SFTRDPSLRA TICSCPHCGE 180 VFMKPENLEL HQAVRHAVSE LGPEDTSKNI VEIIFQSSWL KKQTPVCKID RILKVHNTQK 240 TINKFEEYRD SIKFKATRLP KKHARCIADG NELLRFHCTT FMCSLGLNDS SNLCNSIPHC 300 NVCSIIKNGF KLADEGPTGK GILTTATSGR AHDRADVGSE EQESRAMLVC RVIAGRVKKS 360 PEGGGSEEYD SVAGATGLYS NLDELYVFNP KAILPCFVVI YRGF*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MRNILTCKHL EVEQQPQQEQ ASLSKKKKQQ KKKLAEKPAI QEENSKKNKK MKCSGSLCNN  60
TKVMQRPEPA SPETLQRKSR GGPTHASTST TSSSSHEGSN RSIKSPVLSD LSNNNTNNNG  120
VLLKSSSSNS TTAANYSIKG IPFRRLSGCY ECRMVVDPVL SFTRDPSLRA TICSCPHCGE  180
VFMKPENLEL HQAVRHAVSE LGPEDTSKNI VEIIFQSSWL KKQTPVCKID RILKVHNTQK  240
TINKFEEYRD SIKFKATRLP KKHARCIADG NELLRFHCTT FMCSLGLNDS SNLCNSIPHC  300
NVCSIIKNGF KLADEGPTGK GILTTATSGR AHDRADVGSE EQESRAMLVC RVIAGRVKKS  360
PEGGGSEEYD SVAGATGLYS NLDELYVFNP KAILPCFVVI YRGF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	50	KKKKQQKKKLAEKPAIQEENSKKNKK
2	25	52	KKKKQQKKKLAEKPAIQEENSKKNKKMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	8e-99	C2H2 family protein