PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62023664-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 204aa    MW: 23129.4 Da    PI: 9.9111
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62023664-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.49.2e-141154346
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    i++ + r+ +   R  g+lKK +E+SvLCd++++ ii+++++++
  AUR62023664-RA 11 IKDVTSRKASHKTRSLGLLKKTQEISVLCDVDACAIIYGEDDQV 54
                    899999**********************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MSRKNVKSSI IKDVTSRKAS HKTRSLGLLK KTQEISVLCD VDACAIIYGE DDQVPLAWPS  60
SEAEVRRIIN NYKGKSQVGQ LERQLDQQTF LKQTVQKSEE KLARIQVKNR ELQMENIITD  120
IMAGRSTLEQ VPFCDLGYMI RMLKERMKLV KNRISNWGNN INSNPPFQNS SASRDDNLKI  180
NSSLFHGDGM MEAITSRNNH TSE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-24M-type_MADS family protein