PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62023665-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20754.7 Da    PI: 9.7925
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62023665-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.43.3e-171053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    +ien + r+ t skR +g+ KK +ELSvLCd++++ iif+++ +
  AUR62023665-RA 10 FIENATSRKATSSKRTKGLVKKTQELSVLCDIDACAIIFAKDAQ 53
                    8***************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MARKKVKLAF IENATSRKAT SSKRTKGLVK KTQELSVLCD IDACAIIFAK DAQVPVVWPS  60
SEAEIKRIIS NYRDNSDMYQ LQRQLDQQSL SEVNVIKTEE KVERIQRKNR DLQIENMVTD  120
IMTGKSTIEQ VDPCDLSDLI LVLENRMKSV QHRLKVFGKN SNPRSQGDRT MEASTSGANH  180
TSQ*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.16e-25M-type_MADS family protein