PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62024469-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 190aa    MW: 21711.9 Da    PI: 9.7478
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62024469-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.72.1e-25958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k ien+ nrqvtfskRr+g++KKA+ELSvLCd ++a+iifs tgk y++ 
  AUR62024469-RA  9 KTIENTNNRQVTFSKRRTGLIKKANELSVLCDCDIALIIFSCTGKKYDFV 58
                    68*******************************************99996 PP
2K-box53.11.4e-181021811797
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      + +++ +++e+ +L+ +  +l+G+ L+sL++ eLq+Le++L +++ +iR+kK+++l+eq e+++++e++++e n aLrk+
  AUR62024469-RA 102 PDSDVNSMREELTKLRASCLQLQGKRLDSLTFLELQNLEKRLLEGIMSIRNKKERILREQWERSKQQEEKISE-NAALRKE 181
                     457899**************************************************************99986.5567776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MGRGKIMIKT IENTNNRQVT FSKRRTGLIK KANELSVLCD CDIALIIFSC TGKKYDFVSS  60
KTTMENMLQR YKDFVANRSA TAASNSSNNA ATVEHQLVEY NPDSDVNSMR EELTKLRASC  120
LQLQGKRLDS LTFLELQNLE KRLLEGIMSI RNKKERILRE QWERSKQQEE KISENAALRK  180
EVCVLITNN*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.15e-43MIKC_MADS family protein