PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62025058-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

CO-like

Protein Properties

Length: 412aa MW: 44774.6 Da PI: 4.9014

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62025058-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.6	1.9e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C + H+ H++ AUR62025058-RA 4 ICDYCGEQRSMVYCRSDAAFLCLSCDRNVHSAnalskrHSR 44 7*****************************65667777765 PP
2	zf-B_box	23.8	9.5e-08	46	86	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +C++++ +++ C d + lC++C++ +H g H+ AUR62025058-RA 46 LVCERCNVQPAYVRCIDEGASLCQNCFMVGHDGsttsslHK 86 68*****************************7766666666 PP
3	CCT	61.7	2.3e-21	355	398	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+k RkFeK++rY+sRKa+A+ R+RvKGrFvk+ AUR62025058-RA 355 RTEAVMRYKEKKKARKFEKRVRYASRKARADVRKRVKGRFVKAG 398 89***************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MGYICDYCGE QRSMVYCRSD AAFLCLSCDR NVHSANALSK RHSRTLVCER CNVQPAYVRC 60 IDEGASLCQN CFMVGHDGST TSSLHKQQSI SYYSGCPSAA ELSKIWSFIL DPLPSSDNST 120 CPEGIGLLSI SESGAKNNLD PVGEDDGQDA MDVVAGNDLQ NINKSSVWYG PASITEFVSR 180 ECPDQHERAE SSKLFNSTNR VPRICEDDPL ADLDMDEVDL NFENYDELFG VTLTHSEQLL 240 ENGGINSLFR RQGLSTTDSE GQGGFSVEGA SAGNTGQVQP ACSNVASADS MMSVKTEPNP 300 GIAAKQAHSN LSFSGVTGES SGGDYQDCGA SSMLLLGEPP WCPPCPDSSI QSTSRTEAVM 360 RYKEKKKARK FEKRVRYASR KARADVRKRV KGRFVKAGDA YDYDPLNTRS Y*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MGYICDYCGE QRSMVYCRSD AAFLCLSCDR NVHSANALSK RHSRTLVCER CNVQPAYVRC  60
IDEGASLCQN CFMVGHDGST TSSLHKQQSI SYYSGCPSAA ELSKIWSFIL DPLPSSDNST  120
CPEGIGLLSI SESGAKNNLD PVGEDDGQDA MDVVAGNDLQ NINKSSVWYG PASITEFVSR  180
ECPDQHERAE SSKLFNSTNR VPRICEDDPL ADLDMDEVDL NFENYDELFG VTLTHSEQLL  240
ENGGINSLFR RQGLSTTDSE GQGGFSVEGA SAGNTGQVQP ACSNVASADS MMSVKTEPNP  300
GIAAKQAHSN LSFSGVTGES SGGDYQDCGA SSMLLLGEPP WCPPCPDSSI QSTSRTEAVM  360
RYKEKKKARK FEKRVRYASR KARADVRKRV KGRFVKAGDA YDYDPLNTRS Y*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-114	CO-like family protein