PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62025282-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family ARF
Protein Properties Length: 957aa    MW: 105347 Da    PI: 6.3842
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62025282-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23125226199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d+++++W++++iyr++++r++lt+GW+ Fv++++L +gD+v+F   ++++
  AUR62025282-RA 125 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPCQ-ELMAKDLHNQTWTFRHIYRGQPKRHLLTTGWSVFVSSKRLFAGDSVLFI--RDEK 216
                     99*****************************98888885.*************************************************..5577 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  AUR62025282-RA 217 SHLLLGIRRA 226
                     8889999997 PP
2Auxin_resp123.61.3e-40251333183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPras++eFvv+++k++ka++++vs+GmRf+m+fete++  rr++Gt++g++dldpvrW+nS+Wr+L+
  AUR62025282-RA 251 AAHAATNNSPFTIFYNPRASPAEFVVPLAKYNKAMYTQVSLGMRFRMMFETEECGVRRYMGTITGINDLDPVRWKNSQWRNLQ 333
                     79*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 957 aa     Download sequence    
MKAPSNGLMA NPGEEGRAIN SELWHACAGP LVAVPPVGSL VVYFPQGHSE QVAASMQKET  60
DGIPSYPNLP SKLICMLHSV TLHADPETDE VYAQMTLQPV NKYDRDALLA SEMALKQSRQ  120
PAEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP PCQELMAKDL HNQTWTFRHI  180
YRGQPKRHLL TTGWSVFVSS KRLFAGDSVL FIRDEKSHLL LGIRRANRQQ PALASSVISS  240
DSMHIGILAA AAHAATNNSP FTIFYNPRAS PAEFVVPLAK YNKAMYTQVS LGMRFRMMFE  300
TEECGVRRYM GTITGINDLD PVRWKNSQWR NLQVGWDEST AGERPSRVSI WDIEPVVTPF  360
YICPPPFFRP KFPKQPGMPD DDTDMDSMFK RGMPWLGDDF GMKDAASSIF PGLSLVQWMN  420
MQQNNQVPGA QSGIFPSMLS ASALHGGLGT DDPSKLLNFQ TPSMSMPNLQ FNKAGQHNQN  480
VSQSPMYSQL HHQQLQGGNT QGTPNIQSNK DSVHSTSLSP DMQFQQQTEQ QNSALQRLQQ  540
QQQSQMQHSQ VQSQVTAQQH APQPNQHLLQ RSTSQYQLPQ VGVSTMFTSP LMNSPAVSAV  600
QLQGVQKTSG IVRSLSCPTE GDAPSCSTSP STNNCQIPQS NFLNRNQPAR NMLVEHSVEP  660
NSNMVQDLQE KSDIRIKNEI PNSKVIEPSR INGIITDPLE ASSSVTSYGL DASGLHQNLS  720
LPSFGLDGDV QSHPRNNHPI STAMDDLTPD TFLSRGFDSG KELHNLLSGY NGAPRDIETE  780
LSAAGMSPQS FGVPNMPFKS GCSNDVAAIN DPAGLGGGIW PSQAPRMRTY TKVQKRGSVG  840
RSIDVTRYKG YEELRRDLAR MFGIEGQLED PQRTDWKLVY VDHENDILLV GDDPWDEFVN  900
CVLSIKILSS VEVQQMSLDG DLGSGPIPNQ ASSGTDSGNN AWRGPFDDHS AASFNR*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein