PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62025744-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 666aa MW: 73146.4 Da PI: 4.5945

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62025744-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.7	1.3e-10	313	336	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C f+ rtGtCk+G +CkF+H+p AUR62025744-RA 313 EDCTFYVRTGTCKFGMNCKFNHPP 336 89********************96 PP
2	zf-CCCH	27.1	7.4e-09	373	395	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f r G Ck+G CkF+H++ AUR62025744-RA 373 DCKYFDRPGGCKFGKACKFNHSR 395 6********************95 PP
3	zf-CCCH	37.9	2.9e-12	414	437	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+f++r+G Ck+G++C+F+H+ AUR62025744-RA 414 EKECPFYMRNGSCKFGANCRFNHP 437 689********************9 PP
4	zf-CCCH	31.7	2.5e-10	560	586	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+r+G Cky + CkF+H++ AUR62025744-RA 560 PGQPECSYFLRNGDCKYRSACKFHHPK 586 5789*********************96 PP
5	zf-CCCH	34.4	3.8e-11	607	631	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C++++r+G+CkyG+ Ck+ H+ AUR62025744-RA 607 GENVCSYYSRYGICKYGPACKYDHP 631 6678********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence
MELGLESSSS STCPLGLSLT NQQNSEISSA ESSSPSFDHH QSSDSINDRL VSLSIDAVNG 60 GEDGDPKVER EKNEEENGEI EIVRSNDLKG RNSSDDVIAV IEAADNGDRT EEIGNNEEEC 120 REEKREIEDV IMSELRGRSS SITFATDNNG GEDVDRSEAK ENRKLGSEEK QGIENVSKIE 180 GSEEVLGCRI GSDRIQTEIE SSNNGGEDGD HTVMIENHEV GSGEEKGEVE NVSRIEGSDK 240 ELACRISSDG IQTEIEVGNN GDEDGDGTVV MVNHEVESGE EKGEIENVSR NEGSDKVLSR 300 RNSNKFPVRP EAEDCTFYVR TGTCKFGMNC KFNHPPNNRR FQGVKVRAKE ECVAATIQKV 360 KEKDESVDKE QIDCKYFDRP GGCKFGKACK FNHSRKTNPT SKLNFMGLPI RLGEKECPFY 420 MRNGSCKFGA NCRFNHPDPT SAGGPDASPK YSNGGSIFAP NGSHSTLAPW SPPTTLNENP 480 PYIPLMFSPT QGVPSQSEWN AYQLSQSFPF CFPPSMHVNV DKAPVYPPER SIHIPPTFAM 540 NSQLLKRPEE MLGDEFPERP GQPECSYFLR NGDCKYRSAC KFHHPKNVMA QSPSCLLSDL 600 GLPLRPGENV CSYYSRYGIC KYGPACKYDH PINYAHSSEL TVSAVDQTSV LGDSVVNNQA 660 MAAES*

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence

MELGLESSSS STCPLGLSLT NQQNSEISSA ESSSPSFDHH QSSDSINDRL VSLSIDAVNG  60
GEDGDPKVER EKNEEENGEI EIVRSNDLKG RNSSDDVIAV IEAADNGDRT EEIGNNEEEC  120
REEKREIEDV IMSELRGRSS SITFATDNNG GEDVDRSEAK ENRKLGSEEK QGIENVSKIE  180
GSEEVLGCRI GSDRIQTEIE SSNNGGEDGD HTVMIENHEV GSGEEKGEVE NVSRIEGSDK  240
ELACRISSDG IQTEIEVGNN GDEDGDGTVV MVNHEVESGE EKGEIENVSR NEGSDKVLSR  300
RNSNKFPVRP EAEDCTFYVR TGTCKFGMNC KFNHPPNNRR FQGVKVRAKE ECVAATIQKV  360
KEKDESVDKE QIDCKYFDRP GGCKFGKACK FNHSRKTNPT SKLNFMGLPI RLGEKECPFY  420
MRNGSCKFGA NCRFNHPDPT SAGGPDASPK YSNGGSIFAP NGSHSTLAPW SPPTTLNENP  480
PYIPLMFSPT QGVPSQSEWN AYQLSQSFPF CFPPSMHVNV DKAPVYPPER SIHIPPTFAM  540
NSQLLKRPEE MLGDEFPERP GQPECSYFLR NGDCKYRSAC KFHHPKNVMA QSPSCLLSDL  600
GLPLRPGENV CSYYSRYGIC KYGPACKYDH PINYAHSSEL TVSAVDQTSV LGDSVVNNQA  660
MAAES*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-103	C3H family protein