PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62025745-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C2H2

Protein Properties

Length: 1340aa MW: 149446 Da PI: 8.2045

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62025745-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	1248	1270	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H AUR62025745-RA 1248 CPvkGCGKKFFSHKYLVQHRRVH 1270 9999*****************99 PP
2	zf-C2H2	12.9	0.00034	1306	1332	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H AUR62025745-RA 1306 YVCNepGCGQTFRFVSDFSRHKRKtgH 1332 99********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1340 aa Download sequence
MGSSSFVTAE HSSPEVFPWL KTLPVAPEYH PTIQEFQDPI AYIFKIEKEA SKFGICKIVP 60 PVPPQSKKSV ISNLNRSLQS LPNNCNQNPN NSQPTFTTRQ QQVGFCPRKQ RPIHKSVWQS 120 GEYYTLQQFE AKAKNFEKNY LKNRAKKAVS PFEVETLYWK ANGDRPFSVE YANDMPGSGF 180 IPMKDKKTGE VVSVGASNVG ETAWNMRGVA RSNGSLLRFM KEEIPGVTSP MVYVAMMFSW 240 FAWHVEDHDL HSLNYLHLGA GKTWYGVPKD AASAFEEVIR VHGFGEEINP LVTFATLGEK 300 TTVMSPEVLV NAGVPCCRLV QNAGEFVVTF PRAYHSGFSH GFNCGEASNI ATPEWLRFAK 360 DAAIRRASIN YPPMVSHFQL LYDLALAICS RASVGSNAGP RSSRLKDKKK GEGEMLVKQM 420 FVQDVIQNND LLYTLGQGSE VVLLPHNSSE IFVWSNLRVG SKYKVKPGLP FSLYSSEEAI 480 KASDDIMLAR DVKQQKSFYS VKSKFGGSMS AVPREIQHSE TEKGGGASGD GLSDRGLFSC 540 VKCGIWTFAC VAIVQPTESA AQYLMSADCS SFNDWIVGSG VSSHRIDPND GEANTSDPDS 600 FSGSMEKNGP EGSYGNPVQS TDHQGQSTIN TSTLKSNTSE NVEVGSHTEI KNESSALGLL 660 AMTYGHSSDS DEDDVQPNCP VVSEDNLSGD GSWGARFHQD DSSSPNFEQG YDSGLERGPS 720 QISSRSDCED EDSLQRSDFY EHCGHRRING DDDEYDSHNC SAKFTEEDTL TSERNYSPIA 780 DEHNTAKYSC AIDPVGKPNL SYPRRCDEDS SRMHVFCLEH AVEVEKQLRP IGGVHILLLC 840 HPDYPNVEVE AKKVAEELEM DYGWKDIAFS MATKEDEERI HMALQSEEAT PKNGDWAVKL 900 GINLFYSAIL SRSPLYNKQM PYNSVIYNAF GCSTPSKFSP EAKVCGKGFG RQKKLVMAGK 960 WCGKVWMSNQ VHPLLLNRDP DEDACLKSDV KIGRKSETSY KAQTTYANRK AGKKRRSMPG 1020 SRIAKKMKFE VTDFADTDPE DSVDDKPELE TRRSVRKSKT QCRPIKRVKH QEEIPDTNSE 1080 DSQEYIKSPR GTLRSVRTLK RGAKQILKAK GHQSAAAIHN YSDDDSLDDR SHQHGLRSCN 1140 RKLKAEGKSA RKVISQPKDV DSESEGSPSN ESELEEQRNF RSPGSSQRRE RNKASSEAAS 1200 TEIQRKKSSS SREECYSSKK GSQNEASSIK SMSLGSKQEL ALHKRNICPV KGCGKKFFSH 1260 KYLVQHRRVH MDDRPLKCPW KGCRMTFKWA WARTEHIRVH TGARPYVCNE PGCGQTFRFV 1320 SDFSRHKRKT GHAAKKARK*

Sequence ? help Back to Top

Protein Sequence Length: 1340 aa Download sequence

MGSSSFVTAE HSSPEVFPWL KTLPVAPEYH PTIQEFQDPI AYIFKIEKEA SKFGICKIVP  60
PVPPQSKKSV ISNLNRSLQS LPNNCNQNPN NSQPTFTTRQ QQVGFCPRKQ RPIHKSVWQS  120
GEYYTLQQFE AKAKNFEKNY LKNRAKKAVS PFEVETLYWK ANGDRPFSVE YANDMPGSGF  180
IPMKDKKTGE VVSVGASNVG ETAWNMRGVA RSNGSLLRFM KEEIPGVTSP MVYVAMMFSW  240
FAWHVEDHDL HSLNYLHLGA GKTWYGVPKD AASAFEEVIR VHGFGEEINP LVTFATLGEK  300
TTVMSPEVLV NAGVPCCRLV QNAGEFVVTF PRAYHSGFSH GFNCGEASNI ATPEWLRFAK  360
DAAIRRASIN YPPMVSHFQL LYDLALAICS RASVGSNAGP RSSRLKDKKK GEGEMLVKQM  420
FVQDVIQNND LLYTLGQGSE VVLLPHNSSE IFVWSNLRVG SKYKVKPGLP FSLYSSEEAI  480
KASDDIMLAR DVKQQKSFYS VKSKFGGSMS AVPREIQHSE TEKGGGASGD GLSDRGLFSC  540
VKCGIWTFAC VAIVQPTESA AQYLMSADCS SFNDWIVGSG VSSHRIDPND GEANTSDPDS  600
FSGSMEKNGP EGSYGNPVQS TDHQGQSTIN TSTLKSNTSE NVEVGSHTEI KNESSALGLL  660
AMTYGHSSDS DEDDVQPNCP VVSEDNLSGD GSWGARFHQD DSSSPNFEQG YDSGLERGPS  720
QISSRSDCED EDSLQRSDFY EHCGHRRING DDDEYDSHNC SAKFTEEDTL TSERNYSPIA  780
DEHNTAKYSC AIDPVGKPNL SYPRRCDEDS SRMHVFCLEH AVEVEKQLRP IGGVHILLLC  840
HPDYPNVEVE AKKVAEELEM DYGWKDIAFS MATKEDEERI HMALQSEEAT PKNGDWAVKL  900
GINLFYSAIL SRSPLYNKQM PYNSVIYNAF GCSTPSKFSP EAKVCGKGFG RQKKLVMAGK  960
WCGKVWMSNQ VHPLLLNRDP DEDACLKSDV KIGRKSETSY KAQTTYANRK AGKKRRSMPG  1020
SRIAKKMKFE VTDFADTDPE DSVDDKPELE TRRSVRKSKT QCRPIKRVKH QEEIPDTNSE  1080
DSQEYIKSPR GTLRSVRTLK RGAKQILKAK GHQSAAAIHN YSDDDSLDDR SHQHGLRSCN  1140
RKLKAEGKSA RKVISQPKDV DSESEGSPSN ESELEEQRNF RSPGSSQRRE RNKASSEAAS  1200
TEIQRKKSSS SREECYSSKK GSQNEASSIK SMSLGSKQEL ALHKRNICPV KGCGKKFFSH  1260
KYLVQHRRVH MDDRPLKCPW KGCRMTFKWA WARTEHIRVH TGARPYVCNE PGCGQTFRFV  1320
SDFSRHKRKT GHAAKKARK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein