PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62026061-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 264aa    MW: 29521.4 Da    PI: 7.7097
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62026061-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF793.2e-25958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k ien+ nrqvtfskRr+g++KKA+ELSvLCd ++a+iifs tgk y++ 
  AUR62026061-RA  9 KTIENTNNRQVTFSKRRAGLIKKANELSVLCDCDIALIIFSCTGKKYDFV 58
                    68*******************************************99996 PP
2K-box60.56.8e-211031841899
           K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + +++ +++e+ +L+ +  +l+G++Le L++ eLq Le+qL +++ +iR+kK+++l+eq e+++++e++++een aLrk+++
  AUR62026061-RA 103 DSDVNSMREELTKLRASCLQLQGKGLEGLNFLELQTLEKQLLEGIMSIRNKKERMLREQWERSKQQEEKISEENAALRKEVQ 184
                     57899**************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MGRGKIMIKT IENTNNRQVT FSKRRAGLIK KANELSVLCD CDIALIIFSC TGKKYDFVSS  60
KTTMENMLQR YKDFVANHSA TAASNSSNDA ATVEHQLVEY NPDSDVNSMR EELTKLRASC  120
LQLQGKGLEG LNFLELQTLE KQLLEGIMSI RNKKERMLRE QWERSKQQEE KISEENAALR  180
KEVQRLRQCS KASCSSESNS LKRKRAAAGL STDEGSVMEK EVESDQPFLS LGLPTTRFCG  240
EVIPKTESTS NDSIGENPAT YES*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.14e-40MIKC_MADS family protein